BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485596
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52300.1 | Symbols: ATPQ | ATP synthase D chain, mitochondri... 1334 0.0
> AT3G52300.1 | Symbols: ATPQ | ATP synthase D chain, mitochondrial
| chr3:19396565-19398377 FORWARD LENGTH=889
Length=889
Score = 1334 bits (722), Expect = 0.0
Identities = 847/901 (94%), Gaps = 33/901 (4%)
Strand=Plus/Plus
Query 1 AGGGATTCTAGGGCTTTCCTTCATTGGTCGGATCAGACGACGTTTT-TA-CTTCTTCTTC 58
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 1 AGGGATTCTAGGGCTTTCCTTCATTGGTCAGATCAGACGACGTTTTACATCTTCTTCTTC 60
Query 59 -T--TCTTCG-CATTCGTCA--GTGTGTATTTTGGGGTAAAA-TTTGTGAGCGAAGATCG 111
| |||||| |||||||| ||||||||||||||| |||| ||||||||| |||| ||
Sbjct 61 TTCCTCTTCGATATTCGTCAGTGTGTGTATTTTGGGG-AAAACTTTGTGAGCAAAGAGCG 119
Query 112 AGAAAAATGAGCGGAGCCGGTAAGAAAATCGCGGATGTGGCTTTCAAAGCTTCAAGGACT 171
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AG-AAAATGAGCGGAGCCGGTAAGAAAATCGCGGATGTGGCTTTCAAAGCTTCAAGGACT 178
Query 172 ATCGATTGGGATGGTATGGCTAAGGTCCTTGTCACCGATGAGGCTCGTAGAGAGTTCTCT 231
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ATCGATTGGGATGGTATGGCTAAGGTCCTTGTCACAGATGAGGCTCGTAGAGAGTTCTCT 238
Query 232 AACCTTCGTCGTGCTTTCGATGAGGTTAACACGCAGCTCCAGACCAAATTTAGTCAGGAA 291
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 AACCTTCGTCGTGCTTTCGATGAGGTTAACACACAGCTCCAGACCAAATTTAGTCAGGAA 298
Query 292 CCTGAACCCATAGATTGGGATTTCTACAGGAAGGGTATTGGAGCTGGCATTGTTGACAAG 351
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 299 CCTGAACCTATAGATTGGGATTACTATAGGAAGGGTATTGGAGCTGGCATTGTTGACAAG 358
Query 352 TACAAGGAAGCTTATGACAGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACAAGGAAGCTTATGACAGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAA 418
Query 412 TACAAGCCAAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAAGC-GAAATCGCT 470
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 419 TACAAGCCAAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAA-CAGAAATCGCT 477
Query 471 TCA-GGAGTCTGAACGGTTGGAGAAAGAAATTGCTGACGTCCAAGAGATTAGCAAAAAGC 529
|| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 478 -CAAGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCAAAAAGC 536
Query 530 TCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCAGAACTCAAAAAGAAGTTTG 589
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 TCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAACTCAAAAAGAAGTTTG 596
Query 590 ATGACGAAATCCGTAATGACAACTGGGGATACTGATCATGTTTCTCCATCTCCAGCCTGG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 597 ATGACGAAATCCGTAATGACAACTGGGGATACTGATCATGTTTCTCCATCTCCGGCTTGG 656
Query 650 AACA-AAAActctctttctctttctctttctctgttctcttACTGTGATTTTGTGAGCCA 708
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 AA-AGAAAACTCTCTTTCTCTTTCTCT------GTTCTCTTACTGTGATTTTGTGAGCCA 709
Query 709 ATCATAACAATAATAAGTACACCATTCACTTAAGCAGTGTTGAGATCTTCATTCCAAGGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATCATAACAATAATAAGTACACCATTCACTTAAGCAGTGTTGAGATCTTCATTCCAAGGA 769
Query 769 AGATAAACCCATTTGGTTTTAGTTATCAATTTCATAAATTGTTTCGTTTCGTTCTACAGT 828
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 770 AGATAAACGCATTTGGTTTTAGTTATCAATTTCACAAATTGTTTCGTTTCGTTCTTCAGT 829
Query 829 GAATAATAAGAGTGAAAAGATCTCATCAATTTTATCGTTGTCAAGGAATGAAGAAGGCTC 888
||||||||||||| |||| | | | || ||| ||||||||||||||||||| |||
Sbjct 830 GAATAATAAGAGTCAAAA-A----A--A-TT--ATCATTGTCAAGGAATGAAGAAGACTC 879
Query 889 T 889
|
Sbjct 880 T 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5