BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485597
Length=2308
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52310.1 | Symbols: | ABC-2 type transporter family protein... 3354 0.0
AT5G06530.2 | Symbols: | ABC-2 type transporter family protein... 403 3e-111
> AT3G52310.1 | Symbols: | ABC-2 type transporter family protein
| chr3:19398628-19402953 FORWARD LENGTH=2482
Length=2482
Score = 3354 bits (1816), Expect = 0.0
Identities = 2135/2282 (94%), Gaps = 49/2282 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACCTCATCATCATCATCAGGCTTGGTCAAGGCCAAATCTGAGACACTTGCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 ATGGGAACCTCATCATCATCATCAGGCTTGGTCAAGGCCAAATCTGAGACACTCGCAGAA 236
Query 61 GCTCTTAAGTCTACTTCACTTGATTTTAGCAACGATGACGGTAGCAGCCATGGGAACAAG 120
||||||||||| | |||||||||||| ||||||| ||| || |||||||| |||| ||||
Sbjct 237 GCTCTTAAGTCCAGTTCACTTGATTTCAGCAACGGTGATGGCAGCAGCCACGGGAGCAAG 296
Query 121 CAGCATGTGAGGGCAAAGACATTATCATCGCCAAGCCACAGTAGCAGCCA-CAAAAACAG 179
|||||||||||||| | ||||||||||||||| ||| ||||||||| || |||||||||
Sbjct 297 CAGCATGTGAGGGCTAGGACATTATCATCGCCGAGCTACAGTAGCA-ACAGCAAAAACAG 355
Query 180 AAGGAACACACACATAAGGAAGGCCAAGAGTGCACATCCTGCTCTTGACCTTGGTGGTCT 239
| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 356 ATGGAACACTCACATAAGGAAGGCCAAGAGTGCTCATCCTGCTCTTGACCTTGCTGGTCT 415
Query 240 CACTGGTGGTGCTGCTCTTAGCCGAGCCTCCAGTGCTTCCCTTGGACTTTCCTTCTCTTT 299
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 416 CACTGGTGGTGCTGCTCTTAGCCGAGCCTCTAGTGCTTCTCTTGGACTATCCTTCTCTTT 475
Query 300 CACTGGCTTCACCGTGCCACATGAAGAGATTATTGCTTCAGAGCGATGTAGCAATGACGA 359
|||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 476 CACTGGATTCACCGTGCCACACGAAGAGATAATTGCTTCAGAGCGCTGTAGCAATGACGA 535
Query 360 TATCTTGGAAGATATTGAAGCAGCAACTAGTA-CTGTGGTCAAGTTTCAGGCAGAACCAA 418
||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 536 TATTTTGGAAGATATTGAAGCAGCAACCAGTAGC-GTGGTCAAGTTTCAGGCAGAACCAA 594
Query 419 CCTTTCCGATATATCTTAAGTTCATAGATATCACATACAAGGTAACGACCAAAGGAATGA 478
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 595 CCTTTCCGATATATCTGAAGTTCATAGATATCACATACAAGGTGACAACCAAAGGAATGA 654
Query 479 CATCTTCATCAGAAAAGAGCATCTTGAATGGAATTAGTGGTTCAGCATATCCAGGGGAGC 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 CATCTTCATCAGAAAAGAGCATCTTGAATGGGATTAGTGGTTCAGCATATCCAGGGGAGC 714
Query 539 TTCTAGCTCTCATGGGACCTTCTGGAAGTGGCAAAACTACACTACTTAATGCGCTTGGTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTCTAGCTCTCATGGGACCTTCTGGAAGTGGCAAAACTACACTACTTAATGCGCTTGGTG 774
Query 599 GCAGATTTAATCAGCAAAACATCCGTGGGTTC-GTTAGCTATAATGATAAGCCATATTCT 657
|||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 775 GCAGATTTAATCAGCAGAACATTGGTGGG-TCGGTTAGCTATAATGATAAGCCATATTCT 833
Query 658 AAGCACTTGAAAACCAGGATCGGATTTGTGACTCAAGATGATGTTCTGTTTCCTCACTTA 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGCACTTAAAAACCAGGATCGGATTTGTGACTCAAGATGATGTTCTGTTTCCTCACTTA 893
Query 718 ACTGTAAAAGAGACACTGACCTACACAGCTCTTTTACGTCTTCCTAAAACTCTCACGA-A 776
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 894 ACTGTAAAAGAGACACTGACCTACACAGCTCTGTTACGTCTTCCTAAAACTCTCAC-AGA 952
Query 777 GCAGGAGAAGGAACAAAGAGCTGTTAGTGTGATACAAGAGCTTGGATTGGAAAGGTGCCA 836
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 953 GCAGGAGAAAGAACAAAGAGCTGCTAGTGTGATACAAGAGCTTGGATTGGAACGGTGCCA 1012
Query 837 AGACACAATGATTGGAGGGTCATTTGTACGCGGTGTCTCAGGTGGGGAGAGGAAAAGAGT 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1013 AGACACAATGATTGGAGGGTCATTTGTGCGCGGTGTCTCAGGTGGGGAGAGGAAAAGGGT 1072
Query 897 TTGTATTGGGAATGAGATCATGACTAATCCTTCACTTCTTCTCCTTGATGAACCCACCTC 956
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TTGTATTGGGAATGAAATCATGACTAATCCTTCACTTCTTCTCCTTGATGAACCCACCTC 1132
Query 957 TAGTTTGGACTCTACTACCGCTCTTAAAATTGTTCAGATGCTACAAAGTATAGCAAAGGC 1016
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1133 TAGTTTGGACTCTACTACCGCTCTTAAGATTGTTCAGATGCTACATTGTATAGCAAAGGC 1192
Query 1017 GGGAAAAACTATTGTAACAACAATCCACCAACCGTCAAGTAGGCTCTTCCATAGATTTGA 1076
||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1193 GGGTAAAACAATTGTAACAACAATCCACCAACCGTCTAGTAGGCTCTTTCACAGATTTGA 1252
Query 1077 CAAGCTGGTTGTACTCAGCAGAGGAAGCTTGCTTTACTTTGGGAAAGCATCAGAAGCAAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAAGCTGGTTGTACTCAGCAGAGGAAGCTTGCTTTACTTTGGGAAAGCATCAGAAGCAAT 1312
Query 1137 GTCTTATTTCGCTTCCATAGGATGTTCTCCTCTACTCACCATGAACCCAGCAGAGTTCTT 1196
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1313 GTCTTATTTCTCTTCCATAGGATGTTCTCCTCTACTCGCCATGAACCCAGCAGAGTTCTT 1372
Query 1197 GCTGGACTTAGCTAATGGAAACATGAACGATATCTCCATACCCTCAACTCTTAAAGAGAA 1256
||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| || ||
Sbjct 1373 GCTGGACTTAGTTAATGGAAACATGAACGATATCTCCGTACCTTCAGCTCTT-AA-AG-- 1428
Query 1257 AATGAAGATGGGAAATTCTTGCAGCGAGATGGGATCTTCCAAGCCAAAGCTATATGTAAT 1316
| ||| || | || | | | || | | || || |||| |||||||
Sbjct 1429 -A-GAAAAT--G-AA-----G-A--TA-ATTCG-T-TT---AG----AGCTTTATGTAAG 1465
Query 1317 AAATGCTAACTGTGATGTTGATGCTGAAACACAGTATCTTGAAGAAGCTTACAAGACACA 1376
||||| ||| ||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1466 AAATGTTAA-----ATG-TGATGTTGAAACACAGTATCTTGAGGAAGCTTACAAGACACA 1519
Query 1377 GATTGCAGTCATGGAAAAGATGAAACTTATGACCCCAGTTCCTCTTGATGAAGAAGTTAA 1436
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1520 GATTGCAGTTATGGAAAAGATGAAACTTATGGCTCCAGTTCCTCTTGATGAAGAAGTTAA 1579
Query 1437 ATTGATGGTAACTTGCCCCAAACGTGAATGGGGATTAAGCTGGTGGGGACAGTATTGTTT 1496
| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1580 ACTGATGATAACTTGCCCCAAACGTGAATGGGGATTAAGCTGGTGGGAACAGTATTGTTT 1639
Query 1497 ACTTTCCTTAAGAGGAATCAAAGAACGGAGACATGACTATTTCAGCTGGTTAAGAGTCAC 1556
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 ACTTTCCTTAAGAGGAATTAAAGAACGGAGACATGACTATTTCAGCTGGTTAAGAGTCAC 1699
Query 1557 TCAAGTTCTATCCACTGCTATCATCTTAGGTTTACTCTGGTGGCAATCAGACATTCAACA 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 TCAAGTTCTATCCACTGCTATCATCTTAGGTTTACTCTGGTGGCAATCAGACAT--AACA 1757
Query 1617 TCCCAAAGGCCTACAAGATCAGGTAGGGCTACTCTTCTTTATTGCCGTATTCTGGGGATT 1676
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||
Sbjct 1758 TCCCAAAGGCCTACAAGATCAGG--G--CTACTCTTCTTTATTGCTGTATTCTGGGGTTT 1813
Query 1677 CTTTTCGGTATTCACGGCGATCTTCACATTTCCTCAAGAGAGAGCAATGCTGAGCAAGGA 1736
|||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1814 CTTTCCGGTATTCACAGCGATCTTCACATTTCCTCAGGAGAGAGCAATGCTGAGCAAGGA 1873
Query 1737 ACGAGAGTCAAATATGTATATATTAAGTGCATATTTTGTGGCTAGAACCACAAGCGACCT 1796
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1874 ACGAGAGTCAAATATGTATAGATTAAGTGCATATTTTGTGGCTAGAACCACAAGTGACCT 1933
Query 1797 GCCACTTGACTTGATATTACCTGTGATTTTCCTAGTTGTTGTATATTTCATGGCTGGATT 1856
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1934 GCCACTTGACTTGATATTACCTGTGCTTTTCCTAGTTGTTGTATATTTCATGGCTGGATT 1993
Query 1857 GAGATTAAGAGCTGAATCCTTTTTCCTAAGTGTGCTCACGGTCTTCCTATGCATCGTTGC 1916
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1994 GAGATTAAGAGCTGAATCTTTTTTCCTAAGTGTGCTCACGGTCTTTTTATGCATCGTTGC 2053
Query 1917 AGCTCAGGGACTTGGATTAGCAATAGGGGCGAGCTTAATGGACCTGAAGAAGGCCACAAC 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 AGCTCAGGGACTTGGATTAGCAATAGGGGCGAGCTTAATGGACCTGAAGAAGGCCACAAC 2113
Query 1977 TTTAGCATCAGTAACTGTAATGACTTTTATGCTCGCTGGTGGCTACTTCGTGAAGAAAGT 2036
||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2114 TTTAGCATCGGTAACCGTAATGACTTTCATGCTCGCTGGTGGCTATTTCGTGAAGAAAGT 2173
Query 2037 TCCATTTTTTATTGCTTGGATACGTTTCATGTCCTTCAACTACCACACATACAAGCTCCT 2096
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2174 TCCATTTTTCATTGCTTGGATACGTTTCATGTCATTCAACTACCACACATACAAGCTCCT 2233
Query 2097 TGTGAAGGTACAATATGAAGAAATCATGCAAAACGTAAACGGGGAAGAAATTGAGAGTGG 2156
||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 2234 TGTAAAGGTACAATATGAAGAAATCATGGAAAGCGTAAACGGGGAAGAAATAGAGAGTGG 2293
Query 2157 GCTTAAGGAAGTGAGCGCTCTTGTAGCTATGATTATAGGCTACCGTCTCGTAGCCTACAT 2216
||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 2294 GCTTAAGGAAGTGAGTGCTCTTGTAGCCATGATTATTGGCTACCGTCTCGTAGCCTACTT 2353
Query 2217 TTCTCTTCGAAGGATGAAGCTCCACTCTTCAACTT-ACGTTTAGAGACAAAAATTGTCCA 2275
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 2354 TTCTCTTCGAAGGATGAAGCTCCACTCTTCAACTTGA-GTTTAGAGACAAAAATTGTTCA 2412
Query 2276 TT 2277
||
Sbjct 2413 TT 2414
> AT5G06530.2 | Symbols: | ABC-2 type transporter family protein
| chr5:1989747-1994824 REVERSE LENGTH=2788
Length=2788
Score = 403 bits (218), Expect = 3e-111
Identities = 657/862 (76%), Gaps = 58/862 (7%)
Strand=Plus/Plus
Query 400 AAGTTTCAGGCAGAACCAACCTTTCCGATATATCTTAAGTTCATAGATATCACATACAAG 459
|||||||| ||||||||||| || || || | ||| ||||||| ||| | ||||||||
Sbjct 655 AAGTTTCAAGCAGAACCAACATTGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAA 714
Query 460 GTAACGACCAAAGGAA-TGACATCTTCAT-CAGA-AAAGAGCATCTTGAA-TGGAATTAG 515
|| || | ||| || |||| || || | || |||||| || || || ||| || ||
Sbjct 715 GTGGTGATC-AAGAAATTGACTTCATC-TGTGGAGAAAGAG-ATATT-AACTGGGATAAG 770
Query 516 T-GG-TTCAGCATATCCAGG-GGAGCTTCTAGCTCTCATGGGACCTTCTGGAAGTGGCAA 572
| || | | | |||| || | || |||| |||||||||||||| || || ||||||||
Sbjct 771 TGGGAGTGTG-A-ATCCTGGTGAAG-TTCTTGCTCTCATGGGACCCTCAGGGAGTGGCAA 827
Query 573 AACTACACTACTTAATGCGCTTGGTGGCAGATTTAATCAGC-AAAACATC--CGT-G-GG 627
||| | ||| ||| | |||| | || | | |||| | || | || | | | ||
Sbjct 828 AAC-A-ACT-CTT-CTTAGCTTACTTGCTGGTCGAATC-TCTCAATCCTCTAC-TGGAGG 881
Query 628 TTC-GTTAGC-TATAATGATAAGCCATATTCTAAGCACTTGAAAACCAGGATCGGATTTG 685
|| |||| | || || || ||||| || ||||| ||||||||| || ||| || ||||
Sbjct 882 CTCTGTTA-CTTACAACGACAAGCCTTACTCTAAATACTTGAAAAGCAAGATTGGGTTTG 940
Query 686 TGACTCAAGATGATGTTCTGTTTCCTCA-CTTAACTGTAAAAGAGACACTGACCTACACA 744
|||||||||||||||||||||||||||| |||| | || ||||| || || ||||| |
Sbjct 941 TGACTCAAGATGATGTTCTGTTTCCTCATCTTACC-GTGAAAGAAACGCTAACCTATGCT 999
Query 745 GCTCTTTTACGTCTT-CCTAAAACTCTCACGA-AGCAGGAGAAGGAA-CAAAGAGCTGTT 801
|||| | | || ||| || || ||||| |||| || || ||||| || ||| ||||| ||
Sbjct 1000 GCTCGTCTGCG-CTTACCCAAGACTCTTACGAGAG-AGCAGAAG-AAGCAACGAGCT-TT 1055
Query 802 AGT-GTGATACAAGAGCTTGGATTG-GAAAGGTGCCAAGACACAATGATTGGAGG-GTCA 858
|| || || |||||| |||| || || || ||||||||||| |||||||| || | ||
Sbjct 1056 AGACGTTATCCAAGAG-TTGGGTTTAGAGAGATGCCAAGACACTATGATTGGTGGAG-CA 1113
Query 859 TTTGTACGCGGTGTCTCAGGTGGGGAGAGGAAAAGAGTTTGTATTGGGAATGAGATCATG 918
|| || || ||||| |||||||| |||||||||||||||| |||||| || ||||||||
Sbjct 1114 TTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTATTGGAAACGAGATCATC 1173
Query 919 ACTAATCCTTCACTTCTT-CTCCTTGATGAACCCACCTCTAGTTTGGACTCTACTACCGC 977
| ||||||||| || || || ||||||||||| |||||| |||| || || || || ||
Sbjct 1174 ATTAATCCTTCTCTA-TTACTTCTTGATGAACCAACCTCTGGTTTAGATTCCACCACTGC 1232
Query 978 TCTTAAAATTGTTCAGATGCTACAA-AGTATAGCAAAGGCGGGAAAAACTATTG-TAACA 1035
||||| || ||| |||||| || | || || ||||||| ||||| | | | |||
Sbjct 1233 TCTTAGAACCATTCTGATGCTCCATGAC-ATCGCCGAGGCGGGGAAAACCGT-GATCACA 1290
Query 1036 ACAATCCACCAACCGTCAAGTAGGCTCTTCCATAGATTTGACAAGCTGGTTGTACTCAGC 1095
|| || || || || || ||||||||||||||||| |||||||||||| || |||| ||
Sbjct 1291 ACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGGTTTGACAAGCTGATTCTACT-AGG 1349
Query 1096 A-GAGGAAG-CTTGCTTTACTTTGGGAAAGCATCAGAAGCAAT-GTCTTATTTCGCTTCC 1152
| ||||||| ||| || |||||||| ||| |||||||||| | | ||| ||| |||||
Sbjct 1350 AAGAGGAAGTCTT-CTCTACTTTGGAAAATCATCAGAAGCTTTAGA-TTACTTCTCTTCC 1407
Query 1153 ATAGGATGTTCTCCTCT-ACTCACCATGAACCCAGCAGAGTTCTTGCTGGA-CTTAGCTA 1210
|| ||||| |||||||| | || ||||||| || |||||||||||||| || ||| || |
Sbjct 1408 ATTGGATGCTCTCCTCTTA-TCGCCATGAATCCTGCAGAGTTCTTGCTCGATCTT-GCCA 1465
Query 1211 ATGGAAACATGAACGATATCTC 1232
| || ||||| |||||||||||
Sbjct 1466 ACGGTAACATCAACGATATCTC 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114557643690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5