BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485599
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52340.1 | Symbols: SPP2, ATSPP2 | sucrose-6F-phosphate phos... 2117 0.0
> AT3G52340.1 | Symbols: SPP2, ATSPP2 | sucrose-6F-phosphate phosphohydrolase
2 | chr3:19407052-19409335 FORWARD LENGTH=1568
Length=1568
Score = 2117 bits (1146), Expect = 0.0
Identities = 1278/1341 (95%), Gaps = 11/1341 (1%)
Strand=Plus/Plus
Query 212 TAACCATGGAGCGGCTGATTTCTCATCCTCCTCTCATGATTGTCTCAGACCTTGATCACA 271
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 139 TAACCATGGAGCGGCTGATTTCTCATCCTCCTCTCATGATCGTCTCAGACCTTGATCACA 198
Query 272 CCATGGTTGATCATCAAGATCATGAGAACCTCTCTCTTCTCAGGTTCAATTCATTGTGGG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CCATGGTTGATCATCAAGATCATGAGAACCTCTCTCTTCTCAGGTTCAATTCATTGTGGG 258
Query 332 AATACGCTTATCGCCGTGACTCTCTTCTTGTCTTCTCTACTGCAAGATCACCAATTCTTT 391
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 259 AATACGCTTATCGCCGTGACTCTCTTCTTGTCTTCTCTACAGCAAGATCACCTGTTCTTT 318
Query 392 ATAAAGAATTGAGAAAAGAGAAACCTTTGTTGACTCCTGATATCACCATTACATCAATAG 451
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 319 ATAAAGAATTGAGAAAAGAGAAACCTTTGTTGACTCCTGATATCATTATTACATCAATAG 378
Query 452 GAACCGAGATAGCATTTGGTAACTCCATGGTTGCTGATCATGCTTGGGTTGAATCCTTGA 511
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 379 GAACTGAGATAGCATTTGGTAACTCCATGGTTCCTGATCATGCTTGGGTTGAATCCTTGA 438
Query 512 ACA-CCGATAAATGGAACCGGGAAATAGTCTTGGAAGAAACTAGCAAGTTCCCTGAGTTA 570
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACAGCTG-TAAATGGAACCGGGAAATAGTCTTGGAAGAAACTAGCAAGTTCCCTGAGTTA 497
Query 571 ACTCTTCAGCCAAAAACTGAGCAGAGGCTACACAAGGTCAGCTTTTACATTGATGAAGGT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ACTCTTCAGCCAAAAACTGAGCAGAGGCTACACAAGGTCAGCTTTTACATTGATGAAGGT 557
Query 631 AAAGGTGAGGCATTGACCAAGGAACTATCACAATTGCTGGAGAAACGTGGCTTGGATGTC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AAAGGTGAGGCATTGACCAAGGAACTATCACAATTGCTGGAGAAACGTGGCTTGGATGTC 617
Query 691 AAGATAATTTACAGTTGGGGAAAGAATGTGGATGTTATACCGCGAGGTGCTGGAAAAGGA 750
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 618 AAGATAATTTACAGTTGGGGAAAGAATGTCGATGTTATACCGCGTGGTGCAGGAAAAGGA 677
Query 751 GAAGCCCTCGAGTATCTTCTCAAGAAGCTGCAGGCTGAAGGAATATTCCCTGTTAATACT 810
||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 678 GAAGCGCTTGAGTATCTTCTCAAGAAGCTGCAGGCTGAAGGAATATTCCCGGTCAATACT 737
Query 811 CTTGCTTGCGGTGACTCTGAACATGATGCTGAACTATTTAGCATTCCCGATGTTCACGGT 870
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 738 CTTGCTTGTGGTGACTCTGAACATGATGCTGAACTATTTAGCATTCCTGATGTTCACGGT 797
Query 871 GTTATGGTGAGCAATTCCCAAGAAGAGCTATTGAAGTGGCGTTCTGAAAATGCTTTAAAC 930
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 798 GTTATGGTGAGCAATTCCCAAGAAGAGCTATTGAAGTGGCGTTCTGAAAATGCGTTGAAC 857
Query 931 AACCTAAAGGTTATACATTCAACCGAGAGGTGTGCGGATGGGATTATTCAAGCCATTGGC 990
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 858 AACCTTAAGGTTATACATTCAACCGAGAGGTGTGCTGATGGGATTATTCAAGCCATCGGA 917
Query 991 CATTTTAATCTTGG-CCCAAATCTTTCTCCAAGAGATGTTTCGGAATTCTTGGATTGCAA 1049
|||||||||||||| ||| | ||| |||||||||||||||||||||||||||||| | ||
Sbjct 918 CATTTTAATCTTGGTCCCGA-TCTATCTCCAAGAGATGTTTCGGAATTCTTGGATCGTAA 976
Query 1050 AACGGACAATGCGAATCCTGGTCACGAGGTTGTGAGATTTTACTTGTTCTATGAGAGATT 1109
| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 977 GATGGACAATGTGAATCCTGGTCACGAGGTTGTGAGATTCTACTTGTTCTACGAGAGATT 1036
Query 1110 GAGACGCGGTGAGATCAAGAACTATGAGACATACATAGCCAGCTTCAAAGAGTCATGTCT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1037 GAGACGCGGTGAGATCAAGAACTATGAGACATACATAGCCAGCTTCAAAGATTCATGTCT 1096
Query 1170 CCATGCTGCTGTCCTTTTTCATCCATCAGGTGCAGAGAAATCTCTGAGTGACACCATTGA 1229
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1097 CCATGCTGCTGTCCTTTTTCATCCATCAGGTGCAGAAAAATCTCTGAGAGACACCATTGA 1156
Query 1230 TGAGCTGAAGAAGTGTTATGGTGACAAAAGAGGGAAGAAGTTTTGGGTTTGGGTAGATCA 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TGAGCTGAAGAAGTGTTATGGTGACAAAAGAGGGAAGAAGTTTTGGGTTTGGGTAGATCA 1216
Query 1290 GATTCTGATAACAAACACCATTCCTGGCAAATGGATAGTGAAGTTTGATAAGTGGGAGCA 1349
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GGTTCTGGTAACAGACACCATTCCTGGCAAATGGATAGTGAAGTTTGATAAGTGGGAGCA 1276
Query 1350 ATGCGAGGATGAACGTAAATGCTGCGAAACTACTGTCGAATTCACTTCAAAGGGAGGAAA 1409
||||||||||||| | |||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct 1277 ATGCGAGGATGAAAGCCAATGCTGCAAAACGACTGTCGAATTTACTTCAAAGGGAGGAGA 1336
Query 1410 TTTGGTGTGGGAGAAGGTGAAGCAGATATGGTCTGAGGAACCAGAGGTGAAGGATGATGA 1469
||||||||||||||||||||||||||||||||| |||||| || ||||||| | |||||
Sbjct 1337 TTTGGTGTGGGAGAAGGTGAAGCAGATATGGTCAGAGGAATCAAAGGTGAA--A-GATGA 1393
Query 1470 TAATAGCTCTTGGATTCTCTGAATAT-TTT-GGAGACTGCTT-TTCTCTTTCTCATGAGT 1526
||| || ||||||||||||||||||| ||| |||||||| || |||||||||||||||||
Sbjct 1394 TAACAGTTCTTGGATTCTCTGAATATATTTTGGAGACTG-TTCTTCTCTTTCTCATGAGT 1452
Query 1527 GAATTGGTATATCAACATTCT 1547
|||||||||||| ||||||||
Sbjct 1453 GAATTGGTATATGAACATTCT 1473
Score = 111 bits (60), Expect = 2e-23
Identities = 67/70 (96%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 7 TCTTCTTCAGaaaaaaaaaaaCTTTTTTCTTTCTCTCTCTCAACTTGCAGAAGAAGCGAT 66
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTTCTCCAGAAAAAACAAAACTTTTTTCTTT-TCTCTCTCAACTTGCAGAAGAAGCGAT 59
Query 67 TTACACAAGG 76
||||||||||
Sbjct 60 TTACACAAGG 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5