BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485602
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52350.1 | Symbols: | D111/G-patch domain-containing protei... 710 0.0
AT5G08535.1 | Symbols: | D111/G-patch domain-containing protei... 407 6e-113
> AT3G52350.1 | Symbols: | D111/G-patch domain-containing protein
| chr3:19409606-19410148 REVERSE LENGTH=543
Length=543
Score = 710 bits (384), Expect = 0.0
Identities = 502/557 (90%), Gaps = 16/557 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGGAACAAAATCTCTGGCTTGTACACAGAGAGAAACGTCCGTTGTTCAGCTCCGA 60
|||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGCAAGGAACAGAATATCTGGCTTGTACTCGGAGAGAAACGTCCGTTGTTCAGCTCCGA 60
Query 61 AAGAGGCAAGGTTGGAAGGAAAGTACTGGTCTGGGAATCATCAAACAGGGACTAGGAGCA 120
||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 61 GAGAGGCAAGGTTGGAAGGAAAGTACTGATATGGGAATCACCAAACAGGGACT------- 113
Query 121 GAGACAAATATACAAAGGAGGAAGAAAACAGACAAGTCTCAGGCTACAACTTCTCCA-AA 179
| | |||||||||||||||||||||||| ||||| |||||||||| |||| || |
Sbjct 114 G-G----TTATACAAAGGAGGAAGAAAACAGAAAAGTCCCAGGCTACAATTTCT-CACTA 167
Query 180 TAGTGAAAAAGTGTCCAGTGTTATTGGTGATTCTTCTGAATCAAGCAATTCATTGGCTGC 239
|||||||||||||||| ||||||||| ||||||||||||||||||||| ||| | ||||
Sbjct 168 CAGTGAAAAAGTGTCCAATGTTATTGGGGATTCTTCTGAATCAAGCAATCCATCGACTGC 227
Query 240 TATCAATTCTTCTAACATTGGATTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGTAC 299
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 228 TATCAGTTCTTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAAC 287
Query 300 TGGTCTTGGAATCGCTGAACAAGGTATATTGGAGCCTCTACAAGCAGAGCCAAAACATAA 359
|||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 288 TGGTCTAGGAATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAA 347
Query 360 CAAACAAGGACTAGGATCTGAAAAACCAGCTAAGAGAAAAGCGGCACAGACTCAGGATAC 419
|||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct 348 CAAACAAGGACTAGGAGCTGAAAAACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATAC 407
Query 420 ATCTTCTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATT-GCGGAAGATGA 478
| ||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 408 AGCTTTTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGA 466
Query 479 TTGAGCACGAAAAACGCTTAGCTGAAAACGAATTAGAACGAGCCTTCCGCAGGGAGTTCT 538
| |||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 467 TCGAGCACGAAAAACGATTGGCGGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCT 526
Query 539 GGCCTGATAATATATAA 555
||||||||||| |||||
Sbjct 527 GGCCTGATAATGTATAA 543
> AT5G08535.1 | Symbols: | D111/G-patch domain-containing protein
| chr5:2762029-2763436 FORWARD LENGTH=788
Length=788
Score = 407 bits (220), Expect = 6e-113
Identities = 320/368 (87%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 190 GTGTCCAGTGTTATTGGTGATTCTTCTGAATCAAGCAATTCATTGGCTGCTATCAATTCT 249
||||| || ||||| ||||| || |||| |||||||| ||||||||||||||| |||||
Sbjct 310 GTGTCGAGCGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTCG 369
Query 250 TCTAACATTGGATTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGTACTGGTCTTGGA 309
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 370 TCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGGA 429
Query 310 ATCGCTGAACAAGGTATATTGGAGCCTCTACAAGCAGAGCCAAAACATAACAAACAAGGA 369
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 430 ATCGCTGAACAGGGTATATTGGTGCCTCTACAAGCAGAGCCAAAACATAACAAACGAGGA 489
Query 370 CTAGGATCTGAAA-AACCAGCTAAGAGAAAAGCGGCACAGACTCAGGATACATCTTCTGA 428
| ||| || ||| |||||||||||||||||| ||| ||| |||||| || | | ||
Sbjct 490 GTGGGAGCT-AAACAACCAGCTAAGAGAAAAGTGGCTCAGCCTCAGGCTA-AGGAT--GA 545
Query 429 AGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTGCGGAAGATGATTGAGCACGA 488
|||||| |||||| |||| ||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 546 AGAAGTCTCAAAGCAGAGTAAGAAACTTTCGAAGAAAATGCGGAAGATGATGGAGCACGA 605
Query 489 AAAACGCTTAGCTG-AAAACGAATTAGAACGAGCCTTCCGCAGGGAGTTCTGGCCTGATA 547
||||| ||| | | |||| ||||| |||||||||||| |||||||||||||| ||||
Sbjct 606 AAAACATTTA-CAGGAAAAAGAATTTGAACGAGCCTTCTTTAGGGAGTTCTGGCCCGATA 664
Query 548 ATATATAA 555
|| |||||
Sbjct 665 ATGTATAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5