BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485607
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52390.2 | Symbols: | TatD related DNase | chr3:19422988-19... 1400 0.0
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding p... 122 5e-27
> AT3G52390.2 | Symbols: | TatD related DNase | chr3:19422988-19425183
REVERSE LENGTH=1089
Length=1089
Score = 1400 bits (758), Expect = 0.0
Identities = 822/853 (96%), Gaps = 4/853 (0%)
Strand=Plus/Plus
Query 101 ATGGGATGTTCAAGGGACTTTACCATGGGAAGAAGTGTCATGTTCCCGATATTGCCACTG 160
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 53 ATGGGATGTTCAAAGGACTTTACCATGGCAAGAACTGTCATGTTCCGGATATTGCCACTG 112
Query 161 TCTTGAACCGGGCTTGGTCTGCTGGAGTCGATAGAATCATAGTAACTGGTGGGTCATTGG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TCTTGAACCGGGCTTGGTCTGCTGGAGTCGATAGAATCATAGTAACTGGTGGGTCATTGG 172
Query 221 AAGAATCGAGAGAAGCTCTTGCAATTGCAGAAACTGATGGTAGGCTGTTTTGCACTGTTG 280
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 173 AAGAATCAAGAGAAGCTCTTGCAATTGCAGAGACTGATGGTAGGCTGTTTTGCACTGTTG 232
Query 281 GTGTTCATCCAACTAGATGCAATGAGTTTGAAGAGAGTGGTGATCCAGAAAAGCATTACC 340
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 233 GTGTTCATCCAACTAGATGCAATGAGTTTGAAGAGAGTGGTGATCCGGAGAAGCATTACC 292
Query 341 AGGCTCTTTTTTCATTAGCCAAAGAAGGAATGCAGAAAGGGAAGGTGGTAGCAATTGGTG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGGCTCTTTTTTCATTAGCCAAAGAAGGAATGCAGAAAGGGAAGGTGGTAGCAATTGGTG 352
Query 401 AATGTGGATTGGATTATGATAGGCTTCAATTCTG-TCCAGTTGATATCCAGAAGAAGTAC 459
||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 353 AATGTGGATTGGATTATGACAGGCTTCAATTTTGCTC-AGTTGATATCCAGAAGAAGTAT 411
Query 460 TTTGAGAAGCAATTCGAACTAGCATATGCTACAAAGTTGCCAATGTTCCTACACATGCGA 519
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTTGAGAAGCAATTTGAACTAGCATATGCTACAAAGTTGCCAATGTTCCTACACATGCGA 471
Query 520 GCAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGGTTCCCTGGAGGA 579
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 472 GCAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGGTTCACTGGAGGA 531
Query 580 GTTGCTCATTCATTTACTGGTAGTGCATTGGACCGTGATAAGCTTCTCTCTTTCGATAAA 639
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 532 GTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAA 591
Query 640 CTGTACCTTGGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGATGTAATGAAA 699
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 592 ATGTACCTTGGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAA 651
Query 700 GGGATACCGGTAGAGAGGATGATGATCGAAACCGACTCTCCATATTGTGATATCAAGAAC 759
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGAATACCAGTAGAGAGAATGATGATCGAAACCGACTCTCCATATTGTGATATCAAGAAC 711
Query 760 ACACACGCCGGAATCAAGTTTGTAAAATCGACTTGGCCTTCCAAGAAAAAAGAGAAGTAT 819
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 712 ACACACGCCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTAT 771
Query 820 GATCAAGAATCCCTTGTCAAAGGCCGTAACGAGCCTTGTTTAGTTC-GGCAAGTTCTTGA 878
|||||||| |||||||||||||||||||| |||||||||||||| | ||||||| |||||
Sbjct 772 GATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGT-CAGGCAAGTCCTTGA 830
Query 879 GGTGGTAGCTGGCTACAAAGGACTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCA 938
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGTGGTGGCTGGCTACAAAGGACTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCA 890
Query 939 CAACACTTGCAGG 951
|||||||||||||
Sbjct 891 CAACACTTGCAGG 903
Score = 122 bits (66), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1065 GGAATCAAGATA---TGTTACATTACACCATTTTTGGATTAAAAGCATTCTCAATAAAAA 1121
|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1004 GGAATCAAGATATGTTGTTACATTACACCATTTATGGATTAAAAACATTCTCAATAAAAA 1063
Query 1122 TTACAAACAATCTCGTGTTTTCTATC 1147
|||||||||||||| |||||||||||
Sbjct 1064 TTACAAACAATCTCTTGTTTTCTATC 1089
Score = 115 bits (62), Expect = 9e-25
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 997 TTCTTCCCTCAGGACTTGGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCATGAGACC 1056
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 907 TTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCACGAGACC 966
Query 1057 GACTAGCA 1064
||||||||
Sbjct 967 GACTAGCA 974
> AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421397-19423097 FORWARD LENGTH=1454
Length=1454
Score = 122 bits (66), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Minus
Query 1065 GGAATCAAGATA---TGTTACATTACACCATTTTTGGATTAAAAGCATTCTCAATAAAAA 1121
|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1430 GGAATCAAGATATGTTGTTACATTACACCATTTATGGATTAAAAACATTCTCAATAAAAA 1371
Query 1122 TTACAAACAATCTCGTGTTTTCTATC 1147
|||||||||||||| |||||||||||
Sbjct 1370 TTACAAACAATCTCTTGTTTTCTATC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5