BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485608
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52400.1 | Symbols: SYP122, ATSYP122 | syntaxin of plants 12... 1746 0.0
> AT3G52400.1 | Symbols: SYP122, ATSYP122 | syntaxin of plants
122 | chr3:19425634-19427141 REVERSE LENGTH=1336
Length=1336
Score = 1746 bits (945), Expect = 0.0
Identities = 1192/1307 (91%), Gaps = 33/1307 (3%)
Strand=Plus/Plus
Query 1 TTTGACTCGTCAATATAAATACAATTGTAACAAACAGATTTTGATC---A-A----A--- 49
|||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 6 TTTGACTCGTCAATATAAATACAATTGTAACAAACAGATTTTGATCAAAAGATTTTACTT 65
Query 50 -TCTCAATTCCTTTGAACTTTCAAAATCGAAGATCTCTCGTATCTCTTAAGCCATGAACG 108
||||||||||||| |||||||||||||| | | | |||||||||||||||||||
Sbjct 66 TTCTCAATTCCTTTCAACTTTCAAAATCG-A-A------G-ATCTCTTAAGCCATGAACG 116
Query 109 ATCTTCTCTCCCGCTCGTTT-AACCGCTCCGTCGCGGACGATTCATCGCCGCCGCACTCA 167
||||||||||| |||||||| || | |||||||||||||| |||||||||||||||||||
Sbjct 117 ATCTTCTCTCCGGCTCGTTTAAAAC-CTCCGTCGCGGACGGTTCATCGCCGCCGCACTCA 175
Query 168 CACAACATCGAGATGTCAAAAGCGAAATTCTCCGGCGGAAGTTGCAAAGGTGGTAACAAC 227
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 176 CACAACATCGAGATGTCAAAAGCGAAAGTCTCCGGCGGAAGTTGCCACGGTGGTAACAAC 235
Query 228 CTCGACAAGTTCTACCTCGACGTGGAGGTTGTAAACGAAGACCTTAAAGAGCTTGATCGT 287
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 236 CTAGACACGTTCTTCCTCGACGTGGAGGTTGTAAACGAAGACCTTAAAGAGCTAGATCGT 295
Query 288 CTTC-GTCGCAACCTCCAATCGAGCCACGAACAGAGCAAGACGCTTCATAACGCTATGGC 346
| || ||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 296 C-TCTGTCACAACCTCCGATCGAGCAACGAACAGAGCAAGACGCTTCATAACGCTAACGC 354
Query 347 GGTGAAAGAGCTGATGTTGAAGATGGACGCTGACGTGACGGCGGCGCTCAAGACGGCGAG 406
|||||| ||||||| | |||||||||||||||||| || || ||||| |||||||||||
Sbjct 355 GGTGAAGGAGCTGAAGAAGAAGATGGACGCTGACGTCACTGCTGCGCTTAAGACGGCGAG 414
Query 407 GCGCGTGCAAGGGAACCTTGAGGCTTTAGATCGGGCTAATGAAGTCAACCGGAGTTTACC 466
|||| || |||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 415 GCGCTTGAAAGGAAACCTCGAGGCTTTAGATCGGGCTAATGAAGTCAACCGAAGTTTACC 474
Query 467 GGAAAGTGGACCGGGTTCGTCATCGGACCGGCAAAGGATTTCGGTGGTTAACGGTTTGAG 526
||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||
Sbjct 475 GGAAAGTGGACCGGGTTCGTCGTCGGACCGGCAAAGAACTTCGGTGGTTAACGGGTTGAG 534
Query 527 GAAGAAGCTGAAAGATGACATGGAAAATTTTAATCGAGTGAGAGAGACAATCACGGAGGA 586
|||||||||||| ||||| |||||||| |||| |||||||||||| || |||||| | ||
Sbjct 535 GAAGAAGCTGAAGGATGAGATGGAAAAATTTAGTCGAGTGAGAGAAACGATCACGAATGA 594
Query 587 GTACAAAGAGACGATTGGGAGAAGGTACTTCACCGTCACCGGCGAATATCCCGACGAAGC 646
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 595 GTACAAAGAGACGGTTGGGAGAATGTGCTTCACCGTCACCGGCGAATATCCCGACGAAGC 654
Query 647 TACCGTCGATCGTCTCATCTCCACAGGTGAAAGTGAAACATTCTTGCAGAAAGCGATACA 706
|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 655 TACCCTCGAGCGTCTCATCTCCACAGGTGAAAGTGAAACATTTTTGCAGAAAGCGATTCA 714
Query 707 AGAACAAGGTCGTGGTAGGATTTTGGACACCATCAATGAGATACAAGAGAGGCACGATGC 766
|||||||||||||||||||||||||||||| || || |||||||| ||||||||||| ||
Sbjct 715 AGAACAAGGTCGTGGTAGGATTTTGGACACTATTAACGAGATACAGGAGAGGCACGACGC 774
Query 767 AGTTAAAGACATTGAGAAGAGCTTGAATGAGTTGCACCAAGTGTTTCTTGATATGGCTGT 826
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGTGAAAGATATTGAGAAGAGTTTGAATGAGTTGCACCAAGTGTTTCTTGATATGGCTGT 834
Query 827 GTTGGTTGAGCATCAGGGTGCACAGCTTGACGACATTGAAGGCAACGTCAAACGAGCTAA 886
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 835 GTTGGTTGAGCATCAGGGTGCACAGCTTGATGACATTGAAGGCAACGTCAAACGAGCTAA 894
Query 887 CTCGCTTGTTCGGTCCGGTGCTGACCGGCTTGTTAAGGCACGGTTTTATCAGAAGAATAC 946
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 895 CTCGCTTGTTCGGTCTGGTGCGGACCGGCTTGTTAAGGCACGGTTTTATCAGAAGAACAC 954
Query 947 ACGGAAGTGGACTTGCTTCGCCATTTTGCTATTGCTCATTATTGTGGTTTTAGTTGTGTT 1006
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 955 ACGGAAGTGGACTTGCTTTGCCATTTTGCTATTGCTCATTATTGTGGTTTTAATTGTGGT 1014
Query 1007 GTTTACTGTTAAGCCTTGGGAGAGTAATGGTGGTGGAGGTGGAGGTTCCCCCCGTCAAGC 1066
||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct 1015 GTTTACTGTTAAGCCTTGGGAGAGTAATGGTGGGGGAGGTGGAGGTGCACCTCGTCAAGC 1074
Query 1067 TACTCCGGTTCAAGCTCAGTCACCGCCACCTCCGACTGTGAACCGCCGGCTACTTCGCTA 1126
||||||||||||||||||| |||||||||||||| ||||||| || |||||||| |||||
Sbjct 1075 TACTCCGGTTCAAGCTCAGCCACCGCCACCTCCGGCTGTGAATCGGCGGCTACTACGCTA 1134
Query 1127 AA-ACttttttttttttGAGGTTCCCTCGGTCTATGCATGAGCATATCTATGTTTTGGAA 1185
|| | |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1135 AATAATTTTTTTTTT--GAGGTTCCCTCTGTCTATGCATGAGCATATCTATGTTTTG-AA 1191
Query 1186 -ATTGttttttttttta-a-t-ttttATCTTTAATCTGTTTGTAATGTTTTGGTTGGTTA 1241
|||||||||| ||||| | | |||| |||||||| | ||||||||||||||||||||||
Sbjct 1192 GATTGTTTTTTATTTTACAGTATTTTGTCTTTAATGTTTTTGTAATGTTTTGGTTGGTTA 1251
Query 1242 AACTCTGTGTATATATAATGCGAGCATCACATTTATTTGTTTCATTA 1288
||||||||||||||||||||||| || ||||||| ||||||| ||||
Sbjct 1252 AACTCTGTGTATATATAATGCGATCACCACATTTCTTTGTTTTATTA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5