BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485609
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52420.1 | Symbols: OEP7, ATOEP7 | outer envelope membrane p... 418 1e-116
> AT3G52420.1 | Symbols: OEP7, ATOEP7 | outer envelope membrane
protein 7 | chr3:19429735-19430063 FORWARD LENGTH=329
Length=329
Score = 418 bits (226), Expect = 1e-116
Identities = 259/275 (94%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 4 CCACCGACACGCGAAGGAGACGAAGACGCAGCGATGGGAAAAGCTTCGGGAGCGAAACAG 63
||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 8 CCACCGACACGCGAACAAGACGACGACGCAGCGATGGGAAAAACTTCGGGAGCGAAACAG 67
Query 64 GCGACTGTGGTGGTCGCAGCGTTGGCGTTAGGATGGTTAGCCATAGAGATCGCTTTCAAG 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 68 GCGACTGTGGTGGTCGCAGCGATGGCGTTAGGATGGTTAGCCATAGAGATCGCTTTCAAG 127
Query 124 CCTTTCCTCGACACATTCCGTTCCTCAATCGACAAATCTGACCCGTCCAAAGACCCCGAT 183
||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 128 CCTTTCCTCGATAAATTCCGCTCCTCAATCGACAAATCTGACCCAACCAAAGACCCCGAT 187
Query 184 GACTTCGACACAGCCGCTAAGGCAACCACATCCAAAGAGGGTTTGTAAAATTAGGGTTTT 243
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 188 GACTTCGACACCGCCGCTACTGCAACCACATCCAAAGAGGGTTTGTAAAATTAGGGTTTT 247
Query 244 ATCAGATTAAAGAGATTTGCTGGATT-CAATCCAT 277
|||||||||||||||||| ||| ||| ||||||||
Sbjct 248 ATCAGATTAAAGAGATTTACTG-ATTTCAATCCAT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5