BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485612
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52450.1 | Symbols: PUB22 | plant U-box 22 | chr3:19440739-1... 2423 0.0
> AT3G52450.1 | Symbols: PUB22 | plant U-box 22 | chr3:19440739-19442383
REVERSE LENGTH=1645
Length=1645
Score = 2423 bits (1312), Expect = 0.0
Identities = 1508/1600 (94%), Gaps = 24/1600 (2%)
Strand=Plus/Plus
Query 1 GCTAACTTATTCAAACCAATTCACATAGCTCCTAAATCTCAACGAATACACTTTGAGGCA 60
||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
Sbjct 1 GCTAACTTATTCAAACCAATTCACATATCTCCTAAATCTCAACGACTGCACTTTGA---A 57
Query 61 ACATTTTCTTTTGTTGAGATTCGTTCGTCGTTTCTATTCATTAAGTCTTACTTCTTCTTT 120
| | ||||||| |||||||||||||||||| ||| |||||||| |||||||| |||
Sbjct 58 GC----T-TTTTGTTTAGATTCGTTCGTCGTTTCCATTGATTAAGTC-TACTTCTT-TTT 110
Query 121 TTTCATATTTTCGGGCGGGTCAAATGGATCAAGAGATAGAGATTCCTTCCTTCTTCCTTT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TTTCATATTTTCGAGCGGGTCAAATGGATCAAGAGATAGAGATTCCTTCCTTCTTCCTTT 170
Query 181 GTCCGATCTCTCTAGATATCATGAAAGATCCGGTGATTGTTTCCACCGGAATAACCTACG 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 GTCCAATCTCTCTAGATATCATGAAAGATCCGGTGATAGTTTCCACCGGAATAACCTACG 230
Query 241 ACAGAGAAAGCATCGAGAAATGGCTCTTTTCCGGTAAGAAAAACTCATGTCCGGTCACCA 300
|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 231 ACCGAGAAAGCATCGAGAAGTGGCTCTTTTCCGGTAAGAAAAACTCATGTCCAGTCACCA 290
Query 301 AACAAGTCATAACCGAAACCGATCTTACCCCAAACCACACTCTTCGCCGCCTGATCCAAT 360
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 291 AACAAGTCATAACCGAAACTGATCTTACCCCAAACCACACTCTTCGCCGTTTGATTCAAT 350
Query 361 CTTGGTGTACTCTTAACGCATCATACGGTATCGAGAGGATCCCAACCCCAAAACCTCCGA 420
|||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 351 CTTGGTGTACCCTCAACGCATCATATGGTATAGAGAGGATCCCAACTCCAAAACCTCCGA 410
Query 421 TCTGTAAATCCGAGATCGAAAAGCTTATCAAAGATTCGTCAACTTCGCATCTAAACCAAG 480
|||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 411 TCTGTAAATCGGAGATCGAAAAGCTTATCAAAGAGTCGTCATCTTCGCATCTAAACCAAG 470
Query 481 TCAAATGCCTCAAACGACTTCGTCAAATAGTATCGGAGAATACGACGAACAAACGTTGCT 540
|||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 471 TCAAATGCCTCAAACGACTTCGTCAAATAGTATCTGAGAATACAACCAACAAACGGTGCT 530
Query 541 TAGAAGCCGCAGAAGTTCCGGAGTTTTTGGCGAATATCGTAAGCAACTCCGTTGATACGT 600
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 531 TAGAAGCCGCAGAAGTTCCGGAGTTTTTGGCAAATATCGTAAGCAACTCTGTAGATACGT 590
Query 601 ATAGTTCTCCTTCTTCTTCGCTTTCTTCTTCGAAT-TACAACGACATGTGTCAGTCAAAC 659
||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 591 ATAACTCTCCTTCTTCTTCACTTTCTTCTTCGAATCT-CAACGACATGTGTCAGTCAAAC 649
Query 660 ATGTTGGAGAATCGATTTGATTCTTCAAGAAGCTTGATGGACGAAGCCCTAAGCGTACTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATGTTGGAGAATCGATTTGATTCTTCAAGAAGCTTGATGGACGAAGCCCTAAGCGTACTC 709
Query 720 TACCATCTTGACACATCGGAGACAGCCCTCAAGAGTCTTTTAAACAACAAGAAAGGAACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TACCATCTTGACACATCGGAGACAGCCCTCAAGAGTCTTTTAAACAACAAGAAAGGAACA 769
Query 780 AATCTTGTCAAAACGTTGACGAAGATTATGCAACGTGGGATCTACGAGTCGAGAGCCTAT 839
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 AATCTTGTGAAAACGTTGACGAAGATTATGCAACGTGGGATCTACGAGTCAAGAGCCTAT 829
Query 840 GCGGCTTTGCTTCTCAAGAAGCTCCTAGAAGTTGCGGATCCAATGCAGATCATATTGTTG 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 830 GCGGCTTTGCTTCTCAAGAAGCTCCTGGAAGTTGCGGATCCAATGCAGATCATATTGTTG 889
Query 900 GAACGAGAACTTTTCGGTGAGGTGGTTCAGATCTTGCATGACCAGATCTCTCACAAGGCG 959
|||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 890 GAACGAGAACTTTTCGGTGAGGTGATTCAAATCTTGCACGACCAGATCTCTCACAAGGCG 949
Query 960 ACAAGATCAGCAATGCAAATCTTGGTGATTACATGTCCATGGGGAAGGAATAGACACAAG 1019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 950 ACAAGATCAGCAATGCAAATCTTGGTGATCACATGTCCATGGGGAAGGAATAGACACAAG 1009
Query 1020 GCAGTGGAAGCTGGAGCAATTTCGATGATAATCGAGCTTTTAATGGACGATACTTTCTCA 1079
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCAGTGGAAGGTGGAACAATCTCGATGATAATCGAGCTTTTAATGGACGATACTTTCTCA 1069
Query 1080 TCTGAGCGAAGAAATTCGGAGATGGCGATGGTTGTTCTTGATATGTTATGTCAGTGCGCA 1139
|| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1070 TCAGAGAGAAGGAATTCAGAGATGGCGATGGTGGTTCTTGATATGTTATGTCAGTGCGCA 1129
Query 1140 GAAGGAAGAGCTGAGTTCTTGAATCATGGTGCGGCTATTGCGGTTGTGTCTAAGAAGATA 1199
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1130 GAAGGAAGAGCTGAGTTCTTGAATCACGGTGCCGCTATTGCGGTTGTGTCTAAGAAGATA 1189
Query 1200 TTGAGGGTCTCACAGATAACTAGTGAAAGGGCGGTTAGGGTTTTGCTTTTGGTTGGGAGG 1259
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1190 TTGAGGGTCTCACAAATAACTAGTGAAAGGGCAGTTAGGGTTTTGCTTTCGGTTGGGAGG 1249
Query 1260 TTCTGTGCGACACCCTCTTTGTTGCAGGAGATGTTGCAATTGGGAGTTGTAGCAAAGCTG 1319
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TTCTGCGCGACACCCTCTTTGTTGCAGGAGATGTTGCAATTGGGAGTTGTAGCAAAGCTG 1309
Query 1320 TGTCTGGTTCTTCAAGTTAGCTGTGGGAACAAAACTAAAGAAAAGGCGAAGGAATTGCTT 1379
|||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 1310 TGTCTGGTACTTCAAGTTAGCTGTGGTAACAAGACTAAAGAAAAGGCTAAAGAATTGCTT 1369
Query 1380 AAGCTTCACGCCAGGGTTTGGAGGGAATCACCTTGTGTCCCAAGAAATTTGTATGATTCG 1439
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGCTTCACGCTAGGGTTTGGAGGGAATCACCTTGTGTCCCAAGAAATTTGTATGATTCG 1429
Query 1440 TATCCTGCTTGAACAACGTACATGTTTGATTAATTCTCATCAG-TGACAAA-AATTCTTT 1497
||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||
Sbjct 1430 TATCCTGCTTGAACAACGTACATGTTTGAATAATTCTCATCAGAT-ACAAACAATTCTTT 1488
Query 1498 GAGAGTTATTCTTCTCTTCGTATAAGTTCATTTaaaaacaaaaaaGAGTGGTTTAATTTT 1557
|||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 1489 GAGAATTATTCTTC-----GTATAAGTTCATTTTAAAACAAAAAAGAGTGGTTTAAATTT 1543
Query 1558 TGCTCAAACTCAGATTTTCTTT--T--GTTTTTGTTATAT 1593
||||||||||| |||||||||| | ||||||||| |||
Sbjct 1544 TGCTCAAACTCTGATTTTCTTTCATTTGTTTTTGTTTTAT 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5