BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485614
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1125 0.0
AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:1510694... 468 5e-131
> AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:19450649-19451982
FORWARD LENGTH=970
Length=970
Score = 1125 bits (609), Expect = 0.0
Identities = 727/783 (93%), Gaps = 12/783 (2%)
Strand=Plus/Plus
Query 1 TTTCTTCCCATCATCACTAATCACGACCTCCCCaaa-aaaaaGAAAGATATA-ATTTAGA 58
|||||||||||| |||||| |||||||| | |||| ||||| ||| ||| | |||||||
Sbjct 4 TTTCTTCCCATCGTCACTAGTCACGACC-ACACAAACAAAAA-AAATATA-ACATTTAGA 60
Query 59 GAGAGAGAAAGGTACA-CTAGTGGCAAACTCGTAAATAAAGAATGTCAAAAGATTGCGGT 117
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGAGAAAGGTACAGC-AGTGGCAAACTCGTAAATAAAGAATGTCAAAAGATTGCGGT 119
Query 118 AACCACGGCGGTGGCAAAGAAGCAGCCGTCCGGCGACTCTGCGGCGCCATAATCGCCTTC 177
|||||||| ||||||||||||| || ||||||| |||||||| ||||||||||||||||
Sbjct 120 AACCACGGTGGTGGCAAAGAAGTAGTCGTCCGGAAACTCTGCGCCGCCATAATCGCCTTC 179
Query 178 ATCATAATAGTTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCCACTAAGCCA 237
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 ATCGTAATAGTTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCCACTAAACCA 239
Query 238 AGATTCGTCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCTCAACCAAACCTCCTC 297
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 240 AGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTCGCAACCAAACCTCCTT 299
Query 298 ACTTCAAACTTCCAAATCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTAC 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTAC 359
Query 358 TACGACCGTCTTCACGTCTACGCTACGTACCGGAACCAACAGATCACTCTACGTACGGCG 417
||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 360 TACGACCGTCTCCACGTCTACGCTACATACATGAACCAGCAGATCACTCTACGTACGGCG 419
Query 418 ATTCCTCCGACGTATCAAGGCCACAAAGAAGACAACGTTTGGTCACCTTTCGTCTACGGA 477
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 420 ATTCCTCCGACGTATCAAGGCCACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCTACGGG 479
Query 478 ACCGCCGTTCCGATCGCACCGTATAACTCCGTCGCTTTGGGAGATGACCAAGGTCGTGGA 537
|| || ||||| |||||||| || |||||||||||||||||||| || ||| |||||||
Sbjct 480 ACTGCGGTTCCCATCGCACCTTACAACTCCGTCGCTTTGGGAGAGGAGAAAGATCGTGGA 539
Query 538 TTCGTAGGGTTGATGATACGCGCCGATGGGCA-CGTGAGATGGAAAGTGGGGACTTTGAT 596
|| ||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||
Sbjct 540 TTTGTAGGGTTGATGATACGCGCCGATGGG-ACCGTGAGGTGGAAAGTGAGGACTTTGAT 598
Query 597 CACCGGAAAATATCATATCCATGTTCGGTGCCCGGC-TTACATCAATCTTGGAAACAAAG 655
|||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||
Sbjct 599 CACCGGAAAATATCATATCCATGTTCGGTGTCAGGCGTT-CATCAATCTTGGAAACAAAG 657
Query 656 CTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTATACGTTGATTACTAAATGCAGTG 715
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 658 CTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTACACGTTGGCTAATAAATGCAGTG 717
Query 716 TGAACGTTTAGAAAGTTTGACGGCGTTAAGTTGCtttttttCTTGAACTT-ACCAAACTT 774
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 718 TGAACGTTTAGAAAGTTTGACGGCGTTAAGTTGCTTTTTTTCTTGAAATTCACCAAACTT 777
Query 775 CTT 777
|||
Sbjct 778 CTT 780
Score = 174 bits (94), Expect = 1e-42
Identities = 125/138 (91%), Gaps = 9/138 (7%)
Strand=Plus/Plus
Query 780 CTTTAAGATTTCACTAC-TTTTGGTTGTTATTATAAAAGCTTATTGTTGATTATAGAATT 838
||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||
Sbjct 816 CTTTAAGATTTCACTACTTTTTGGTTGTTA-T-T--AAGCTTATTGTTGATTATAGAATT 871
Query 839 ATTACAACCACGACGGTCTGTGGTTGGATTTAATTGTAAATCCA----ATAAAGTTGAAA 894
||||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 872 ATTACAATCACGAAGGTCAGTGGTTGGATTTAACTGTAAATCCACTTTATAAAGTTGAAA 931
Query 895 TAAAATGGAGGATTGGGT 912
||||||||||||||||||
Sbjct 932 TAAAATGGAGGATTGGGT 949
> AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:15106940-15107993
FORWARD LENGTH=1054
Length=1054
Score = 468 bits (253), Expect = 5e-131
Identities = 511/634 (81%), Gaps = 23/634 (4%)
Strand=Plus/Plus
Query 106 AAAGATTGCGGTAACCACGGCGGTGGC--A-AAGAAGCAGCCGTCC-GGCGACTCTGCGG 161
||||||||||| ||||||||||| ||| | || || | ||| || | ||| |||||||
Sbjct 220 AAAGATTGCGGAAACCACGGCGGCGGCGGAGGAGGAGGAACCG-CCAGTCGAATCTGCGG 278
Query 162 CGCCATAATCGCCTTCATCATAATAGTTC-TAATCACCATCTTCCTAGTTTGGGTCATAC 220
| || |||| ||||||||| || | || | || || || ||||| |||||| | || |
Sbjct 279 AGTAATCATCGGCTTCATCATCATCG-TCTTGATAACAATATTCCTCGTTTGGATAATCC 337
Query 221 T-CAGGCCCACTAAGCCAAGATTCGTCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTC 279
| || || || || ||||||||| ||||||||||||||||||||| |||||| || |||
Sbjct 338 TCCA-ACCGACAAAACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAATCTC 396
Query 280 TCTCAACCAAACCTCCTCACTTCAAACTTCCAAATCACAATCGCATCTCGTAACCCTAAC 339
|| || || ||||||||||| |||||||| || ||||| ||||| || ||||||| |||
Sbjct 397 TCGCAGCCTAACCTCCTCACCTCAAACTTTCAGATCACGATCGCTTCACGTAACCGAAAC 456
Query 340 TCCAAG-ATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACGTACCGGAACCAACA 398
| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 457 T-CAAGAATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACTTACCGGAACCAACA 515
Query 399 GATCACTCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAGACAACGTTTG 458
|||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||
Sbjct 516 AATCACTCTACGTACAGCAATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTG 575
Query 459 GTCACCTTTCGTCTACGGAACCGCCGTTCCGATCGCACCGTAT-AACTCCGTCGCTTTGG 517
||| |||||||| || |||| | |||| || ||||| || | | ||| |||| ||| | |
Sbjct 576 GTCTCCTTTCGTTTATGGAAACTCCGTCCCTATCGCTCCTT-TCAACGCCGTGGCTCTCG 634
Query 518 GAGATGACCA-AGGTCGTGGATTCGT-AGGGTTGATGATACGCGCCGATGGGCACGTGAG 575
| || || || | |||||| || || | | ||||| |||||||||||||| | ||||||
Sbjct 635 GCGACGAGCAGAA-TCGTGGGTTTGTCACG-TTGATTATACGCGCCGATGGACGCGTGAG 692
Query 576 ATGGAAAGTGGGGACT-TTGATCACCGGAAAATATCATATCCATGTTCGGTGCCCGGC-T 633
||||| || |||||| || || || || || |||||| |||||||||| || | ||| |
Sbjct 693 GTGGAAGGTCGGGACTCTT-ATTACAGGGAAGTATCATCTCCATGTTCGTTGTCAGGCGT 751
Query 634 TACATCAATCTTGGAA-ACAAAGCTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTA 692
| ||| ||||| || | ||||| || || |||| |||||| || |||||||| |||||
Sbjct 752 T-CATAAATCT-GGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAAACGCCGTCAAGTA 809
Query 693 TACGTTGATTACTAAATGCAGTGTGAACGTTTAG 726
| |||||| | ||| |||||||| || ||||||
Sbjct 810 CATGTTGATCAATAAGTGCAGTGTCAATGTTTAG 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5