BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485615
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 966 0.0
> AT3G52480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage; Has 28
Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:19452254-19453162
REVERSE LENGTH=909
Length=909
Score = 966 bits (523), Expect = 0.0
Identities = 652/713 (91%), Gaps = 13/713 (2%)
Strand=Plus/Plus
Query 1 ACAAACGAAACGACGCAGTTTTAAGGTTAATCTCTCTCAAACTCT-GTCTACTAAATGGG 59
||||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1 ACAAACGAAACGACGCAGTATTAAGGTTACTCTCTCTCAAACTCTCGTCTCCTAAATGGG 60
Query 60 TCTTAGCCAAACCGCAATCGTACTCGTCGCGGTTTTCGCGTTTTGTCTCGTAGCTGTAAC 119
||||| || ||| |||| | |||||||||| |||||||||||||| ||||| ||||||||
Sbjct 61 TCTTACCCCAACTGCAACCCTACTCGTCGCTGTTTTCGCGTTTTGCCTCGTCGCTGTAAC 120
Query 120 GGCACAGCTCGCCTACGTTTTGTGGTGGAAACGTCGGTTTCGTCGTCGGAGTATCGCCGG 179
||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GGCGCAGTTCGCCTACGTTTTGTGGTGGAAACGTCGGTTCCGTCGTCGGAGTATCGCCGG 180
Query 180 ATCAGAACTCGACGCTTTCTCCTCCCGCGGCGGTGACCCGACGGCTACACCACCGCCTTC 239
|||||||| ||||||||| ||||| ||||| ||||||| ||||||||||||||||| ||
Sbjct 181 ATCAGAACGCGACGCTTTTTCCTCTCGCGGTGGTGACCTAACGGCTACACCACCGCCATC 240
Query 240 GAAAGAGCTTCTTTACTTCTTCTTGTTCTGTCTCGAAAACAAACAGTTCCGAATAGGATC 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GAAAGAGCTTCTTTACTTCTTCTTGTTCTGTCTCGAAAACAAACAGTTCAGAATAGGATC 300
Query 300 CGCCACAGCTCCGCCTCTCCCTGCAGCTGCTCCTCCGGTTAGTGACGTGGCGTCGAAGTG 359
||||| |||||||| ||||||||||| || || ||||||| ||||||||| || |||||
Sbjct 301 TGCCACCGCTCCGCCGCTCCCTGCAGCCGCACCGCCGGTTAATGACGTGGCATCAAAGTG 360
Query 360 GTCAATAAACGGAGAAAATTTACTTTGCGGACCTTCGGAGACTTTGTTTACAATCGCTGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GTCAATAAACGGAGAAAATTTACTTTGCGGACCTTCGGAGACTTTGTTTACCATCGCTGA 420
Query 420 AGACTATACTAGCGAGTCCGATCATCGCACGGGTGAGATTGATCCACGTGGAAGCATCTC 479
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 AGACTATACTAGCGAGTCCGATCATCGGACGGGTGAGATTGATCCACGTGGAAGCATCTT 480
Query 480 TACTGAGGATAATGTAAAGGATGATGAAGTGAAAGAGGAGATTGTCGTGACGGATATAAG 539
||| |||||| |||||||||||||||||||| |||||||| | |||| ||||||||||||
Sbjct 481 TACAGAGGATCATGTAAAGGATGATGAAGTGGAAGAGGAGGTAGTCGCGACGGATATAAG 540
Query 540 CGACGACGAGGTTGACTTTAG--A--A----CGA-C---GCCGTTTTCTACTCCATGTGC 587
||||||||||||||||||||| | | | | | |||||||||||||||||||||
Sbjct 541 CGACGACGAGGTTGACTTTAGCCACTATAATCAAACTACGCCGTTTTCTACTCCATGTGC 600
Query 588 TTCGCCGCCGTTTTACACGCCGTCTCCTTCTCCGATTCGTGATGATCTCTCTAGGACGGT 647
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TTCCCCACCGTTTTACACGCCGTCTCCTTCTCCGATTCGTGATGATCTCTCTAAGACGGT 660
Query 648 AGGTGAGGAGCGTTTGTACGGCTGAGATAGGTTTAGTTCTCCGATTAACCGGG 700
| |||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 661 ACGTGAGGAGAGTGTGTACGGCTGAGATAGGTTTAGTTCTCCGATTAGCCGGG 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5