BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485618
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 281 3e-75
> AT3G52520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G06280.3);
Has 24 Blast hits to 24 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19473483-19473884
FORWARD LENGTH=402
Length=402
Score = 281 bits (152), Expect = 3e-75
Identities = 170/179 (95%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGCTGAAAATTTGATGAATCTTTCTCTTCTCCAACGCAGAAACGGCGCCGTTTCA 60
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTGAGAATTTGATGAATCTTTCTCTTCTCCAACGCAGAAACGGCGCCGTTTCA 60
Query 61 CAAACCCTAGACTTAGAGCTCGCGTCCGTCAACAAATCCTCCGATGATCCTCTTCCATGT 120
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 61 CAAACCCTAGATTTAGAGCTCGTGTCCGTCAACAAATCCTCCGAGGATCCTCTTCCATGT 120
Query 121 TACACCTCCCTCAAAGACATCCTCCCCTCCCCCTCCACCACCGTCGATTCCCCTGCCAT 179
||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 121 TACACTTCCCTCAAAGACATCCTCCCTTCCTCCTCCACCACCGTCGATTCCCCCGCCAT 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5