BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485623

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52561.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   645    0.0  


> AT3G52561.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G11600.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr3:19497082-19497596 REVERSE LENGTH=515
Length=515

 Score =  645 bits (349),  Expect = 0.0
 Identities = 429/467 (92%), Gaps = 7/467 (1%)
 Strand=Plus/Plus

Query  1    CCCATCACCTAGAacaacacaaagaaaaacaaatacaaaaatacaaaaaCCCTCTCGGCG  60
            |||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct  34   CCCATCCCCTAGAAAAACACAGAGAAAAACAAATACAAGAATACAAAAACCCTCTCGACG  93

Query  61   AAACCGAAGTTTCGAAATGAGAAACAAGAACGGTAAAAGAGTTAGAGTTGAGCCATCGAC  120
            |||||||||| ||||||||||||||||||| |||||||||| ||| |||||||| ||| |
Sbjct  94   AAACCGAAGTATCGAAATGAGAAACAAGAATGGTAAAAGAGGTAGCGTTGAGCCCTCGGC  153

Query  121  AAGGACCGTGGCATCGGTGGTTGCTAATGGGAGGTTTGAAGGAAGATCACCATCGAGCGA  180
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  GAGGACCGTGGCGTCGGTGGTTGCTAATGGGAGGTTTGAAGGAAGATCACCATCGAGCGA  213

Query  181  CACGTTATCATCGCAAAACTCGTGCCTGTCGACGACGGAGGACGTGAAGGAGGAGATTGC  240
            ||| | |||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||||
Sbjct  214  CACATCATCATCACAAAACTCGTGCCTGACGAGGACGGAGGAAGTGAAGGAGGAGGTTGC  273

Query  241  ATCGTCGTGGGTTGATGAAGAAGAGGCGCCGGATATGGTGGTGGTGGGATGTCGAAGATG  300
            ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct  274  ATCGTCGTGGGTTGATGAAGAAGAGGCGCCGGAGATGGTGGTGATGGGATGTCGAAGTTG  333

Query  301  TCTGATGTATGCTT-TGGTCTTACAAGAACGTAAACGTTGCCCCAAGTGCAAATGCACCG  359
            | ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  334  TATGATGTATG-TTATGGTCTTACAAGAACGTCAACGTTGCCCCAAGTGCAAATGCACCG  392

Query  360  ACTTGATCTTCTTTTAATTAGAGAATTTGTTCTAAGCTATGGTTTTAATTTGGACTTTTG  419
            ||||||||||||||||    ||||||||||| |||| |||  ||  ||||||||||||||
Sbjct  393  ACTTGATCTTCTTTTA----GAGAATTTGTTTTAAGTTATTATTC-AATTTGGACTTTTG  447

Query  420  AGTTTGAGATGATGAATTTTATTTTCTTTGTAAAGTCCTCTATATAA  466
            ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  448  AGTTTGAGATGATGAATTTAATTTTCTTTGTAAAGTCCTCTATATAA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5