BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485626
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52570.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1727 0.0
> AT3G52570.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:19501130-19502999 FORWARD LENGTH=1227
Length=1227
Score = 1727 bits (935), Expect = 0.0
Identities = 1130/1224 (92%), Gaps = 14/1224 (1%)
Strand=Plus/Plus
Query 1 AGAGGAAGAATCAATGGCGAGAAC------TCTAAAGAACCGATTTGAATATCGCTTTTG 54
||| |||||||||||||||||||| | ||| |||||||||||||| ||||||||
Sbjct 3 AGAAGAAGAATCAATGGCGAGAACGAGAATTATAACGAACCGATTTGAATCTCGCTTTTT 62
Query 55 GCTTCGTTTCCTTCAGTCTCCGAGTTTGTTCGTCTCTTGTTTCACGACTTCGAGATCTCT 114
| ||||||||||| | ||||||| | | |||| |||||||||||||| ||| ||||||||
Sbjct 63 GATTCGTTTCCTTGAATCTCCGACTCTATTCGCCTCTTGTTTCACGAGTTCCAGATCTCT 122
Query 115 CCAAACCCTAGCCTACGAAGAAGTCCGATCCTCCGGTAAT-GGGAAGTCTGAATCAACAG 173
||||||||||||||||||||||||||| |||||||| || ||| |||||||||| ||||
Sbjct 123 TCAAACCCTAGCCTACGAAGAAGTCCGAACCTCCGGTGATCGGG-AGTCTGAATCTACAG 181
Query 174 CTCTCATCCTTCACGGCCTCCTCGGCTCCGGACGCAACTGGAGATCGTTTtctcgctctc 233
||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 182 CTCTCATCCTTCATGGCCTCCTCGGTTCCGGTCGCAACTGGAGATCGTTTTCTCGCTCCC 241
Query 234 tcgcatcgtctctctctgtctcctcttcttctGTTTGGAAGATGATATTGGTTGATCTGA 293
| ||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 242 TTGCATCATCTCTCTCCGTCTCCTCTGCTTCTGATTGGAAGATGATATTGGTTGATCTGA 301
Query 294 GGAACCATGGGAGATCTTCGGAGGTGGAAGGGCTTAATCCACCTCATGATCTTGTGAATT 353
||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 302 GGAACCATGGGAGATCTGCGGAAGTGGAAGGGCTTAATCCGCCTCATGATCTTGTGAATT 361
Query 354 CAGCTAAGGATTTAGCTGATTTGGTTAAAGCAAGTGGTTGGAAATGGCCTGAGGTGGTCA 413
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 362 CAGCTAAGGATTTAGCTGATTTGGTTAAAGCAAGTGGCTGGAATTGGCCTGATGTGGTCA 421
Query 414 TTGGTCACTCTTTGGGAGGTAAAGTGGCTTTGCAGTTTATGGAGAGTTGTGCTCGTGGTG 473
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 422 TTGGTCACTCTTTGGGAGGTAAAGTGGCGTTGCAGTTCATGGAGAGTTGTGCTCGTGGTG 481
Query 474 ATTTTGGTG-ATACAGCTTCTCCTCCTAAACAGCTATGGGTACTAGACTCTGTCCCTGGG 532
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATTTTGGTGAAT-CTGCTTCTCCTCCTAAACAGCTATGGGTACTAGACTCTGTCCCTGGG 540
Query 533 GAAGTCAAGGCAGAAAAAAGTGATGGTGAAGTAGAGAAAGTTCTTCAGACGTTGCAGAGT 592
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 541 GAAGTCAAGGCAGAAAAAAGTGATGGTGAAGTAGAGAAAGTTCTGAAGACTTTGCAGAGT 600
Query 593 TTACCTTCACCAATCCCTTCTCGCCAGTGGCTCGTGGATCATATGGTCGAACTTGGTTTT 652
||||||||| |||||||||||||| ||||||| || |||| ||||||||||||||| |||
Sbjct 601 TTACCTTCATCAATCCCTTCTCGCAAGTGGCTTGTTGATCGTATGGTCGAACTTGGGTTT 660
Query 653 TCAAGATCATTATCTGAGTGGATTGGTAGCAATCTCAAGAGATCTGGAGACTCAGAGATA 712
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 661 TCAAGATCATTATCCGAGTGGATTGGCAGCAATCTCAAGAGATCTGGAGACTCAGAGACA 720
Query 713 TGGGCCTTTAACCTTGACGGAGCTATCCAAATGTTCAACTCTTACAGAGAGACTTCTTAC 772
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 TGGACCTTTAACCTTGACGGAGCTGTCCAAATGTTCAACTCTTACAGAGAGACTTCTTAC 780
Query 773 TGGTCTTTGCTAGAGAATCCACCGAAAGAGACAGAGATAAATTTTGTGATTGCAGAAAAG 832
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGTCTTTGCTAGAGAACCCGCCAAAAGAGACAGAGATAAATTTTGTGATTGCAGAAAAG 840
Query 833 AGTGACCGATGGGACAACGATACAACCAAGCGGCTTGAAACAATTGCTAACCAGAGACAG 892
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 AGTGACCGATGGGACAACGATACAACCAAGCGGCTTGAAACAATAGCTAACCAGAGACAG 900
Query 893 AATGTCTCAGAAGGGAAAGTTGCGACTCACCTTCTTCGTAACTCTGGCCATTGGGTACAC 952
||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AATGTAGCCGAAGGGAAGGTTGCGACTCATCTTCTTCGTAACTCTGGCCATTGGGTACAC 960
Query 953 ACAGAAAATCCAAAGGGACTCCTAGAGATTGTGAGTCCCAAATTCTTCTCCCCACACGAG 1012
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 ACAGACAATCCAAAGGGACTCCTAGAGATTGTGAGTCCCAACTTCTTCTCCCCACACGAG 1020
Query 1013 TAGACGATGCGCTACGAAAATGACATTAGTCTTTGATTATATTTTCTCTCCTGTCCAGTA 1072
|||||||||||||||||||||| |||||||||||| ||| | |||| ||||||| |||||
Sbjct 1021 TAGACGATGCGCTACGAAAATGGCATTAGTCTTTGCTTACAATTTCACTCCTGTTCAGTA 1080
Query 1073 TTTATATGCAGAAAATAGCAAATTCAATTGCAACTGTTTTGACGATGCGCGGTTTTTTCC 1132
| |||||||||||| |||||||| |||| |||||| ||||||||||||||||||||| ||
Sbjct 1081 TCTATATGCAGAAA-TAGCAAATCCAATCGCAACTATTTTGACGATGCGCGGTTTTTCCC 1139
Query 1133 GTTTGTGATTTGTTA-TTTTGCGTTTGCATTTC-TTTCTACAATGTACAAACGTTTAGGA 1190
||||||| ||| || |||||| || |||| || |||| |||||||||||||||||||||
Sbjct 1140 GTTTGTG-TTTCCTAATTTTGCATTAGCATATCCTTTCAACAATGTACAAACGTTTAGGA 1198
Query 1191 GGATCTAATAATATCATTAAACTT 1214
||||||||||| |||| |||||||
Sbjct 1199 GGATCTAATAACATCAATAAACTT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5