BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485631

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52620.1 | Symbols:  | unknown protein; Has 11 Blast hits to...   501    2e-141


> AT3G52620.1 | Symbols:  | unknown protein; Has 11 Blast hits 
to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:19513086-19513645 FORWARD 
LENGTH=380
Length=380

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 312/332 (94%), Gaps = 1/332 (0%)
 Strand=Plus/Plus

Query  1    AAAATGGCAACGGATACAACAACTTTTCCAGAAGGAGATGCAGAAGCTGAACTAAATCCT  60
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct  25   AAAATGGCAACGGATACAACAACTTTTCCTGAAGGCGATGCAGAAGCTGAACTTAATCCT  84

Query  61   GGCCAAAACAAGAATTTCGAAGTAGATCCTGTTTCATCAGAGATTGCTGCTGAGAAGGTA  120
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  85   GGCCAAAACAAGAATTTCGAAGTAGATCCTGTTTCATCAGAGATTGCTTCTGAAAAGGTA  144

Query  121  Caaaaaaacgtggaaaagagagaaaacgcaaaggcaaagagagacgcggcgcaaacgctt  180
            ||||||| ||| |||||||| ||||||||||||||||||||||| | ||| | |||||||
Sbjct  145  CAAAAAATCGTAGAAAAGAGGGAAAACGCAAAGGCAAAGAGAGATGGGGCACGAACGCTT  204

Query  181  aaaaagaCGATCATAATATCAGCAGTGATCGTGGCCGTCGCAGGAGCCGCTTTTGCTATA  240
            ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  205  AAAAACACGATCATAGTATCAGCAGTGATTGTGGCCGTCGCAGGAGCCGCTTTTGCTATA  264

Query  241  ACCAAGAAATTAAAAGAGAATAAATGATTTTATACAAGTTCATTTCTCAAATTTCCTTTG  300
            ||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct  265  ACCAAGAAATTGAAAGAGAATAAATGATCTTATACAAGTTAATTTCTCAATTTTCCTTTG  324

Query  301  TAACTTTTTCTTACATAAGAAATTAAGAAAAA  332
            |||||||| |||||||||||||||||||||||
Sbjct  325  TAACTTTT-CTTACATAAGAAATTAAGAAAAA  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5