BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485632 Length=477 Score E Sequences producing significant alignments: (Bits) Value AT3G52630.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 538 2e-152 > AT3G52630.1 | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:19513996-19514723 FORWARD LENGTH=496 Length=496 Score = 538 bits (291), Expect = 2e-152 Identities = 363/397 (91%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 18 ATTCGCAACTCCGACGAGCGATTCATCTTCTCCAATAAGTAGATAAAGAAAATGGATACA 77 ||| ||||||||||||| ||||||||||||||||| | |||| || ||||||||| Sbjct 1 ATTTGCAACTCCGACGAACGATTCATCTTCTCCAA-CA--AGAT--AG-CAATGGATACT 54 Query 78 TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGATGAGGCGATACATTGGGCAAAAAGTC 137 ||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||| Sbjct 55 TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGTTGAGGAGATTCATTGGCCAAAAAGTC 114 Query 138 AGAACTGTGATTCAAGTGATC-GGTTCAGATATTGGATCTGTGGTCGGAAAATCTACTGA 196 ||||||||||||||||||| | |||||||| |||||||||||||| || ||||||||||| Sbjct 115 AGAACTGTGATTCAAGTGA-CTGGTTCAGAGATTGGATCTGTGGTTGGCAAATCTACTGA 173 Query 197 TGATCTTCAGATCGTTGTTAGGGGATCTTCTCCGACTCCTCCTCTTACTACTTACCTTGA 256 ||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| Sbjct 174 TGATCTTCAGATCGTTGTTAGAGGATCGTCTCCTCCTTCTCCTCTTACTACTTACCTTGA 233 Query 257 GGTCATTGGAATTGCTGAGAGTGATAACGCCATTCGAGCTGAAACTTGGACCAATTTTGG 316 ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 234 GGTTATTGGAATTGCAGAGAGTGATAACGCTATTCGAGCTGAAACTTGGACCAATTTTGG 293 Query 317 CAACAGTTTTGATCCACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA 376 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 CAACACTTTTGATACACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA 353 Query 377 GCACTTGTTCATCTAATGCTGTGAAGGTGATTTTGAT 413 |||||||||||||||||| ||||| | ||||| |||| Sbjct 354 GCACTTGTTCATCTAATGTTGTGATGATGATTATGAT 390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22705834444 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5