BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485632

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52630.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   538    2e-152


> AT3G52630.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr3:19513996-19514723 FORWARD LENGTH=496
Length=496

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 363/397 (91%), Gaps = 8/397 (2%)
 Strand=Plus/Plus

Query  18   ATTCGCAACTCCGACGAGCGATTCATCTTCTCCAATAAGTAGATAAAGAAAATGGATACA  77
            ||| ||||||||||||| |||||||||||||||||  |  ||||  ||  ||||||||| 
Sbjct  1    ATTTGCAACTCCGACGAACGATTCATCTTCTCCAA-CA--AGAT--AG-CAATGGATACT  54

Query  78   TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGATGAGGCGATACATTGGGCAAAAAGTC  137
            ||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||
Sbjct  55   TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGTTGAGGAGATTCATTGGCCAAAAAGTC  114

Query  138  AGAACTGTGATTCAAGTGATC-GGTTCAGATATTGGATCTGTGGTCGGAAAATCTACTGA  196
            ||||||||||||||||||| | |||||||| |||||||||||||| || |||||||||||
Sbjct  115  AGAACTGTGATTCAAGTGA-CTGGTTCAGAGATTGGATCTGTGGTTGGCAAATCTACTGA  173

Query  197  TGATCTTCAGATCGTTGTTAGGGGATCTTCTCCGACTCCTCCTCTTACTACTTACCTTGA  256
            ||||||||||||||||||||| ||||| |||||  || ||||||||||||||||||||||
Sbjct  174  TGATCTTCAGATCGTTGTTAGAGGATCGTCTCCTCCTTCTCCTCTTACTACTTACCTTGA  233

Query  257  GGTCATTGGAATTGCTGAGAGTGATAACGCCATTCGAGCTGAAACTTGGACCAATTTTGG  316
            ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  234  GGTTATTGGAATTGCAGAGAGTGATAACGCTATTCGAGCTGAAACTTGGACCAATTTTGG  293

Query  317  CAACAGTTTTGATCCACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA  376
            ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  CAACACTTTTGATACACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA  353

Query  377  GCACTTGTTCATCTAATGCTGTGAAGGTGATTTTGAT  413
            |||||||||||||||||| ||||| | ||||| ||||
Sbjct  354  GCACTTGTTCATCTAATGTTGTGATGATGATTATGAT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5