BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485634
Length=2521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52640.2 | Symbols: | Zn-dependent exopeptidases superfamil... 1692 0.0
> AT3G52640.2 | Symbols: | Zn-dependent exopeptidases superfamily
protein | chr3:19514873-19520544 REVERSE LENGTH=2502
Length=2502
Score = 1692 bits (916), Expect = 0.0
Identities = 979/1010 (97%), Gaps = 2/1010 (0%)
Strand=Plus/Plus
Query 617 AGGGTGTCAAGTGATTTGAGCTTTGCTAGCAAAATTGGTGGTGTTCTAGTTCAATCAGGA 676
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 492 AGGGTGTCAACTGATTTGAGCTTTGCTAGCAAAATTGGTGGTGTTCTAGTTGAATCAGGA 551
Query 677 TCTAATTTCCAACAAAAGTTAAAAGGCTTTTCTCCTGATAAAAAGTTTCCTCAAGCGCAG 736
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct 552 TCTAATTTCCAACAAAAGTTAAAAGGGTTTTCTCCTGATAAAAGGTTTCCTCAAGCCCAG 611
Query 737 TTTTCACCCTATGAAAACGTTGAGTACAAATGGAATTCAGCTGCATCAAGCATCATGTGG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TTTTCACCCTATGAAAACGTTGAGTACAAATGGAATTCAGCTGCATCAAGCATCATGTGG 671
Query 797 AAAAATTATAATTTTCCTGTGTACTTATTGTCAGAAAGTGGCATATCAGCTGTGCAGGAG 856
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 672 AGAAATTATAATTTTCCTGTGTACTTATTGTCAGAAAGTGGCATATCAGCTGTGCATGAG 731
Query 857 ATCCTTTCCAAGAAAAAGATGAAGCATGGAACATATACCAGTGATGTTGCTGAGTTCAAT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 732 ATCCTTTCCAAGAAAAAGATGAAGCATGGAACATATACCAGTGATGTTGCTGAATTCAAT 791
Query 917 ATGGTTATGGAGACTACCAAAGCTGGAACACATAATTCGGAGGCTTGTTTGCAGGAAGGA 976
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 792 ATGGTTATGGAGACTACCAAAGCTGGAACACACAATTCGGAGGCTTGTTTGCAGGAGGGA 851
Query 977 ACTTGCCTGCCATTGGGCGGATATAGTGTTTGGTCCTCGCTTCCACCAATCAGTGTTTCG 1036
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 ACTTGCCTCCCATTGGGCGGATATAGTGTTTGGTCCTCGCTTCCACCAATCAGTGTTTCG 911
Query 1037 TCTTCCAACAATCGCAAACCAGTTGTGCTCACTGTGGCCTCCATGGATTCTGCATCGTTT 1096
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 912 TCTTCCAACAATCGCAAACCAGTTGTGCTGACTGTGGCCTCCATGGATACTGCATCATTT 971
Query 1097 TTCCGTGACAAAAGTTTTGGTGCAGATTCACCAATATCTGGTCTGGTAGCTCTTCTGGGA 1156
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 972 TTCCGTGACAAAAGTTTTGGTGCAGATTCACCAATATCTGGTCTGGTAGCTCTTCTAGGA 1031
Query 1157 GCAGTTGATGCTCTTTCTCGAGTTGATGGT-TTAAGTAATCTCAAAAAGCAGCTTGTGTT 1215
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1032 GCAGTTGATGCTCTTTCTCGAGTTGATGGTATT-AGTAATCTCAAAAAACAGCTTGTGTT 1090
Query 1216 TTTGGTTCTGACCGGAGAGACATGGGGTTACCTTGGCAGCAGGAGGTTCTTACACGAATT 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TTTGGTTCTGACCGGAGAGACATGGGGTTACCTTGGCAGCAGGAGGTTCTTACACGAATT 1150
Query 1276 AGATCTGCATTCAGATGCTGTTGCAGGCCTTAGCGATATTTCGATTGAAACGGTGCTTGA 1335
||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 1151 AGATCTGCATTCAGATGCTGTCGCAGGCCTTAGCAATACTTCGATTGAAACGGTGCTTGA 1210
Query 1336 AATAGGATCCGTTGGAAAAGGTTTAAGTGGAGGGATAAACACCTTCTTTGCTCATAAAAC 1395
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AATAGGATCTGTTGGAAAAGGTTTAAGTGGAGGGATAAACACCTTCTTTGCTCATAAAAC 1270
Query 1396 TAGAGTTTCTTCAGTTACAAACATGACACTGGATGCTTTAAAAATAGCTCAGGATTCACT 1455
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1271 AAGGGTTTCTTCAGTTACAAACATGACACTGGATGCTTTAAAGATAGCTCAGGATTCACT 1330
Query 1456 TGCATCCAAGAACATAAAAATTCTTTCAGCTGATACTGCAAACCCTGGAATACCCCCATC 1515
|||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1331 TGCATCAAAAAACATCAAAATTCTTTCAGCAGATACTGCAAACCCTGGAATACCCCCATC 1390
Query 1516 TTCCTTGATGGCTTTCATGAGAAAGAACCCTCAGACTTCAGCTGTTGTACTTGAAGACTT 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CTCCTTGATGGCTTTCATGAGAAAGAACCCTCAGACTTCAGCTGTTGTACTTGAAGACTT 1450
Query 1576 TGATACCAAGTTTGTGAATAAGTTCTACCATAGTCACCTCGATGACTTGT 1625
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 TGATACCAACTTTGTGAATAAGTTCTACCATAGTCACCTCGATGACTTGT 1500
Score = 1391 bits (753), Expect = 0.0
Identities = 851/898 (95%), Gaps = 8/898 (1%)
Strand=Plus/Plus
Query 1626 CAAATATCAACTCCTCGTCTGTAGTAGCTGCTGCTTCAGTTGTGGCCCGTACACTTTACA 1685
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1588 CAAATATCAACTCCTCGTCTGTAGTAGCTGCTGCTTCTGTTGTGGCCCGAACACTTTACA 1647
Query 1686 TCCTTGCAAGTGACAACAAAGATACAAGCAATTCAGCTCTGGGATCCATCCATGTCAATG 1745
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 TCCTAGCAAGTGACAACAAAGATACAAGCAATTCAGCTCTGGGATCCATCCATGTCAATG 1707
Query 1746 CTTCTTTCATTGAAGAGCTTTTAACCTGTCTTTTAGCTTGTGAACCGGGCTTATCTTGCA 1805
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CTTCTTTCGTTGAAGAGCTTCTAACCTGTCTTTTAGCTTGTGAACCGGGCTTATCTTGCA 1767
Query 1806 ACTTGGTAAAAGACTATATTTCACCAACAAACACTTGCCCAGGCAACTATGCTGGAGTCA 1865
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1768 ACTTGGTAAAAGACTATATTTCACCGACAAACACTTGTCCAGGCAACTATGCTGGCGTCA 1827
Query 1866 TCCTCGGTGAACCTTCCTCCAAACCTTACCTTGGTTACGTCGGTGATGTTTCTAGATTCC 1925
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TCCTCGGAGAACCTTCCTCCAAACCTTACCTTGGTTACGTCGGTGATGTTTCTAGATTCC 1887
Query 1926 TATGGAACTTTCTGGCAGATAAAACATCTGTCCAGAAGGGGAACACAACCTCAGTTTGTT 1985
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1888 TATGGAACTTTCTGGCAGATAAAACATCTGTCCAAAAGGGAAATACAACCTCAGTTTGTT 1947
Query 1986 CAAAAGGAGTCTGTAGCAAAA-TCGACGAAGTATGCATTAAAGCAGAGAGCAACAAGGAG 2044
||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 1948 CAAAAGGAGTCTGTAGCAAAACT-GACGAAGTGTGCATCAAAGCAGAGAGCAACAAGGAA 2006
Query 2045 GGAACATGTGTGGTCTCCACAACCAGGTATGTTCCAGCTTATTCAACCCGATTGAAGTAT 2104
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2007 GGAACATGTGTTGTCTCCACAACCAGGTATGTTCCAGCTTATTCAACTCGATTGAAGTAT 2066
Query 2105 AACGATGGAGCTTGGACAATTCTGCCCCAGAACTCATCAGATTCTATGGGGATGGTCGAT 2164
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 2067 AACGATGGAGCTTGGACAATTCTACCACAGAACTCATCAGATTCTATGGGGATGGTTGAT 2126
Query 2165 CCAGTGTGGACCGAAAGCAACTGGGACACTATAAGGGTGCATGTGTACACAGTCCAACAC 2224
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2127 CCAGTGTGGACCGAAAGCAACTGGGACACTTTAAGGGTGCATGTGTACACAGTCCAGCAC 2186
Query 2225 TCAGCATACGACAATGCAGTCCTTGTTGCAGGTATCATAGTCACAACGTTGGCGTACATC 2284
||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct 2187 TCAGCATACGACAATGCAGTCCTCGTTGCAGGTATTACAGTCACAACGTTGGCTTACATC 2246
Query 2285 GGGATTTTGGCTGCTAAGTCAATCATCACAAAAGCCTTGAAGCAGGACTGAGATTTGTAT 2344
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2247 GGAATTTTGGCTGCTAAGTCAATCATCACAAAAGCCTTGAAGCAGGACTGAGACTTGTAT 2306
Query 2345 TTAATCCCCTCTCCTCTCGGCCCAAAATTACTTGTCAGTTTCAGCAAGACATTGCCTAAT 2404
||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 2307 TTAATTCCCTCTCCTCTCGGCTCAAAATTACTTGTCAGTTTCCGTAAGACATTGCCTAAC 2366
Query 2405 TAGCAACACCACCAATAC-TATGGTTGTAGAAACCTTTTTTCTCAACCAAGGTTATTAAA 2463
||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||
Sbjct 2367 CAGCAACACCACCAATACCT-TAGTGGTAGAAACCTTTTTTCTCAACCAAGGTTATTAAA 2425
Query 2464 AAATCGTCCTTTTGAGCTAATTCATATTAAAATTCTGTATTACACTGGCAAGAAATTT 2521
| || ||| ||| |||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 2426 ATAT-GTC-TTT-GAGCTAATTCATGTTAAA-TTCTTTATTACACTGGCAAGAAATTT 2479
Score = 507 bits (274), Expect = 3e-142
Identities = 305/320 (95%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 127 TGCTATGGCAATGGGACTTCTTCGTCTTGTTGCTATTGC-TTTAGCACTTGTTCTAGTTT 185
||||||||||||||||||| |||||||| || |||| || |||| ||||||||||| |||
Sbjct 176 TGCTATGGCAATGGGACTTATTCGTCTTCTTTCTATAGCTTTTA-CACTTGTTCTACTTT 234
Query 186 CAATCCTTCCTCTTCATGTCTCTCTCGCTGGTGAGATTACATCTATTGAATCTGTTCCTG 245
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 235 CAATCCTTCCTCTTCATCTCTCTCTCGCTGATGAGATAACATCTATTGAATCTGTACCTG 294
Query 246 ATCTTCAGAAGCTAATGTATGTTGCTGTTGATGGGTATCCTTGTGTACGGCTTCTCAATC 305
| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 295 ACCTTCAGAAGCTAATGTATGTTGCTGTTGATGGGTTTCCTTGTGTACGTCTTCTCAATC 354
Query 306 TTTCTGGAGAGATTGGATGTTCAAATCCTGGAATAAATAAAGTGGTGGCTCCAATCATAA 365
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTCTGGAGAGATTGGATGTTCAAATCCTGGAATAAATAAAGTGGTGGCTCCAATCATAA 414
Query 366 AATTAAAGGACGTTAAAGATTTGGTTCAGCCACACACTATTTTGGTTACAGCTGATGAAA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AATTAAAGGACGTTAAAGATTTGGTTCAGCCACACACTATTTTGGTTACAGCTGATGAAA 474
Query 426 TGGAAGATTTCTTTACCAGG 445
||||||||||||||||||||
Sbjct 475 TGGAAGATTTCTTTACCAGG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125116355842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5