BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485637
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2538 0.0
AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 501 8e-141
AT5G28330.1 | Symbols: | pseudogene, RNA recognition motif (RR... 355 7e-97
> AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19521660-19524906 FORWARD LENGTH=1785
Length=1785
Score = 2538 bits (1374), Expect = 0.0
Identities = 1520/1589 (96%), Gaps = 15/1589 (1%)
Strand=Plus/Plus
Query 41 TTTCAACACCTGAGCTGCGCGAATAAACAAACACTTGTTCATCCTCTCCGTAATTCTCAA 100
|||||||||||||| |||||| | | | | |||||| |||||||||||||||||||||||
Sbjct 76 TTTCAACACCTGAGGTGCGCG-A-AGATAGACACTTCTTCATCCTCTCCGTAATTCTCAA 133
Query 101 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGT-CTTGCAAGCGTTCTTTTCTAGATA 159
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 134 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGTAC-TGCAAGCATTCTTTTCTAGATA 192
Query 160 CTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCACGATTCAATGGAGTCTGAG 219
|||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 193 TTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCATGACTCCATGGAATCTGAG 252
Query 220 GAAAGGGTAGACCTTGACGGTGACAATGATCCTGAGGAGATTCTggaggaggaagttgaa 279
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GAAAGGGTAGACCTTGATGGTGACAATGATCCTGAGGAGATTCTGGAGGAGGAAGTTGAA 312
Query 280 tatgaagaagtagaagaggaggaggaaattgaagagatagaagaggagatagaggaggag 339
|| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 313 TACGAAGAAGTTGAAGAGGAGGA-G--ATTGAAGAGATAGAAGAGGAGATAGAGGAGGAG 369
Query 340 gtggaagt-g--gaaga--a-gaggaggaggatgctgttgcaacggaagaggaagaagaa 393
|| ||||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 370 GTTGAAGTGGAAGAAGAGGAGGAGGAGGAGGATGCTGTTGCAACGGAAGAGGAAGAAGAA 429
Query 394 AAGAAAAGGCATGTTGAACTCCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 453
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAGAAAAGGCATGTTGAACTTCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 489
Query 454 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGAGCTTCTGTCAATCAATAGGAGAA 513
|||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 490 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGGGCTTCTGTGGATCTATAGGAGAA 549
Query 514 GTTACTGAGGTTAGGATAATGAGGGAAAAGGAATCTGGTGATGGAAAGGGGTATGCATTT 573
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 550 GTTACTGAGGTTAGGATAATGAGGGAAAAGGATTCTGGTGATGGAAAGGGGTATGCATTT 609
Query 574 GTGACATTCAGAAACAAGGACTTAGCAGCTGAAGCAATCGATACTCTAAATAGCACTGAA 633
|| |||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 610 GTAACATTCAGAAGTAAGGACTTAGCTGCTGAAGCAATTGATACTCTAAATAACACTGAC 669
Query 634 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGC 693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGT 729
Query 694 AATGTTCCTAGAAATTGGACT-GAGTCAGACATTAAGAAAGCAGCGAATAAAATTGGTCC 752
||||| ||||||||||||| | ||||||||||||||||||||||| |||| |||||||||
Sbjct 730 AATGTCCCTAGAAATTGGA-TGGAGTCAGACATTAAGAAAGCAGCAAATAGAATTGGTCC 788
Query 753 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 848
Query 813 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 908
Query 873 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 968
Query 933 AGGAGGAGGAGACTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTGCCTAG 992
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 969 AGGAGGAGGAGATTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTACCTAG 1028
Query 993 AGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1052
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGATATAACACAAGAGCGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1088
Query 1053 GGTGATTCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCACTATGC 1112
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1089 GGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCATTATGC 1148
Query 1113 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1208
Query 1173 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCGGATCAAAAGGCGAATACAAATACAGT 1232
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1209 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCTGATCAAAAGACGAATACAAATACAGT 1268
Query 1233 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1328
Query 1293 GGCTCCTAGTCCCTTTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1352
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1329 GGCTCCTAGTCCCTTTGGTGCTCTCGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1388
Query 1353 AATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATAATGTTACCCGA 1412
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1389 AATGCATGCCGGAGGTCACGCAGCCGGTGGAATGTCGATGATGCCAATCATGTTACCCGA 1448
Query 1413 TGGAAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCACAACCACCACC 1472
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1449 TGGGAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCGCAACCACCACC 1508
Query 1473 AAGGCCTTCTCCACCATATAGGGGAGGCAGCGGTTCGagcagcagcagcagcagcaAACG 1532
||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1509 AAGGCATTCTCCACCGTATAGGGGAGGCAGCGGTTCGAGCAGCAGCAGCGGCAGCAAACG 1568
Query 1533 AAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTAATAATTC 1592
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1569 AAGTAGTGACAACGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTCATAATTA 1628
Query 1593 TGTCTTCTTTATTTGGAAAAACACCCCAA 1621
||| ||||||||| |||||||||||||||
Sbjct 1629 TGTTTTCTTTATTGGGAAAAACACCCCAA 1657
Score = 63.9 bits (34), Expect = 5e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 1 AGTCTCGCTTAGGCATCTTTTAGGTCATATCA-TACAA 37
|||||||||||||||||||||||||||||||| |||||
Sbjct 20 AGTCTCGCTTAGGCATCTTTTAGGTCATATCAATACAA 57
> AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:10342024-10342997 REVERSE LENGTH=543
Length=543
Score = 501 bits (271), Expect = 8e-141
Identities = 293/304 (96%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 865 ATGTCAAATCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 924
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAATCCGAGTTTCAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 60
Query 925 AGGAGTGGAGGAGGAGGAGACTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAAC 984
||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||
Sbjct 61 AGGAGTGGAGGAGAAGGAGACTCTTCTGCCTCTCAGGTCAAGGCATTGTACATCAAGAAT 120
Query 985 TTGCCTAGAGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATA 1044
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTACCTAGAGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATA 180
Query 1045 CTGAAAGTGGTGATTCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTG 1104
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGAAAGTGGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTG 240
Query 1105 CACTATGCAGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATT 1164
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 241 CACTACGCAGAGAGGACAAGCGTAATGCGAGCTTTGAAAAACACTGAAAGATATGAGATT 300
Query 1165 GATG 1168
||||
Sbjct 301 GATG 304
Score = 351 bits (190), Expect = 9e-96
Identities = 231/249 (93%), Gaps = 9/249 (4%)
Strand=Plus/Plus
Query 1330 GCTTCTGCCTACTCACAACCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCG 1389
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCTTCTGCCTATTCACAACCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCG 363
Query 1390 ATGATGCCAATAATGTTACCCGATGGAAGAATCGGATACGTCTTGCAACAGCCTGGACTA 1449
||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 364 ATGATGCCAATCATGTTACCTGATGGAAGGATCCGATACGTCTTGCAACAGCCTGGACTA 423
Query 1450 GCAGCTATGCCACAACCACCACCAAGGCCTTCTCCACCATATAGGGGAGGCAGCGGTTCG 1509
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 424 GCAGCGATGCCACAACCACCACCGAGGCCTTCTCCACCGTATAGGGGAGGCAGCGGTTCG 483
Query 1510 agcagcagcagcagcagcaAACGAAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAAT 1569
||||| |||| | | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 484 AGCAGTAGCA--A--A-CAAA-G---TAGCGACAATGGTAGAGGACGAAGCCGTTACAAT 534
Query 1570 CCTTATTAG 1578
|||||||||
Sbjct 535 CCTTATTAG 543
> AT5G28330.1 | Symbols: | pseudogene, RNA recognition motif (RRM)
- containing protein, contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM); blastp
match of 59% identity and 2.3e-35 P-value to GP|29371361|gb|AAO72701.1||AY224581
putative RNA-binding protein {Oryza
sativa (japonica cultivar-group)} | chr5:10307169-10308142
FORWARD LENGTH=974
Length=974
Score = 355 bits (192), Expect = 7e-97
Identities = 206/213 (97%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 958 CAGGTCAAGGCATTGTACATCAAGAACTTGCCTAGAGATATAACACAAGAACGTCTAAAG 1017
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 251 CAGGTCAAGGCATTGTACATCAAGAATTTACCTAGAGATATAACACAAGAACGTCTAAAG 310
Query 1018 GCATTATTTGAACATCACGGGAAAATACTGAAAGTGGTGATTCCACCAGCAAAACCAGGA 1077
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 311 GCATTACTTGAACATCACGGGAAAATACTGAAAGTGGTGATCCCACCAGCAAAACCAGGA 370
Query 1078 AAGGAAGACAGTAGATACGGATTTGTGCACTATGCAGAGAGGACAAGTGTCATGCGAGCT 1137
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 371 AAGGAAGACAGTAGATACGGATTTGTGCACTACGCAGAGAGGACAAGCGTAATGCGAGCT 430
Query 1138 TTGAAAAACACTGAAAGATATGAGATTGATGGT 1170
|||||||||||||||||||||||||||||||||
Sbjct 431 TTGAAAAACACTGAAAGATATGAGATTGATGGT 463
Score = 172 bits (93), Expect = 7e-42
Identities = 100/103 (97%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 1245 GAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCATGGCTCCTAGTCC 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 GAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCATGGCTCTTAGTCC 535
Query 1305 CTTTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTACTCACAA 1347
| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 C-TTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTATTCACAA 577
Score = 148 bits (80), Expect = 1e-34
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 865 ATGTCAAATCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 924
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAATCCGAGTTTCAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 60
Query 925 AGGAGTGGAGGAGGAGGAGACTCTTCGGCTTCCCAGGT 962
||||||||||||| |||||||| ||| || || |||||
Sbjct 61 AGGAGTGGAGGAGAAGGAGACTTTTCTGCCTCTCAGGT 98
Score = 139 bits (75), Expect = 8e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1348 CCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATAATGTTA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 CCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATCATGTTA 726
Query 1408 CCCGATGGAAGAATCGGATACGTCTTG 1434
|| |||||||| ||| |||||||||||
Sbjct 727 CCTGATGGAAGGATCCGATACGTCTTG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5