BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485645

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52740.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   769    0.0  


> AT3G52740.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G44450.1); 
Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546374-19546964 
REVERSE LENGTH=591
Length=591

 Score =  769 bits (416),  Expect = 0.0
 Identities = 482/512 (94%), Gaps = 12/512 (2%)
 Strand=Plus/Plus

Query  32   CTATTGTGTAATCATGATGAACATCGACGATACGACGTCTCCAATGGCTCACCCGATTGG  91
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  84   CTATTGTGTCATCATGATGAACATCGACGATACGACGTCTCCAATGGCCCACCCGATCGG  143

Query  92   TCCATCTCAGCCTCTTTCCGACCAAACCAAACAAGATCCGCCAAGTTTG-CCCAGCGAAG  150
            |||||||||||||| |||||||||||||||||||||||||||||||||| ||||  ||||
Sbjct  144  TCCATCTCAGCCTCCTTCCGACCAAACCAAACAAGATCCGCCAAGTTTGCCCCA-AGAAG  202

Query  151  CAGCTTCTTCTGTTT---CCGACAAGAAAGATCTAGCTTTACCTGAAGAGAAACCGAAAC  207
            |||||||||||||||   |||||||||||||||||||||| | ||||||||||||||| |
Sbjct  203  CAGCTTCTTCTGTTTCGGCCGACAAGAAAGATCTAGCTTTGCTTGAAGAGAAACCGAAGC  262

Query  208  AGAATCaagaag-ag--agagtggacactgggagagagaggttaaagaagcaccggagag  264
            ||| |||||||| ||  ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  263  AGAGTCAAGAAGAAGATAGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCATCGGAGAG  322

Query  265  agaTCGCCGGTAGGGTTTGGATACCTGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT  324
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  323  AGATCGCTGGTAGGGTTTGGATACCGGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT  382

Query  325  GGATCGATTGTTCAGCGTTTGACACATGTCTAGTCCCTGCCGGAATATCGTCTGCACGTG  384
            |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| 
Sbjct  383  GGATCGATTGTTCAACGTTTGACACGTGTCTAGTCCCTGCCGGAATCTCGTCTGCACGTA  442

Query  385  CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT  502

Query  445  GCTTGATCTTACGCTGAATCTAATATAATAAGATA-CATACTTATAAATGTGGTTCTTGT  503
            ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  503  GCTTGATCTTACGTTGAATTTAATATAATAAGATAACATACTTATAAATGTGGTTCTTGT  562

Query  504  TCCTCAATAATAATATAAGGCACTATTGTTAC  535
            |||||||||||| || | ||||||||||||||
Sbjct  563  TCCTCAATAATA-TA-A-GGCACTATTGTTAC  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5