BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485647
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52760.1 | Symbols: | Integral membrane Yip1 family protein... 1450 0.0
AT2G36300.1 | Symbols: | Integral membrane Yip1 family protein... 643 0.0
> AT3G52760.1 | Symbols: | Integral membrane Yip1 family protein
| chr3:19553679-19554812 REVERSE LENGTH=1134
Length=1134
Score = 1450 bits (785), Expect = 0.0
Identities = 977/1066 (92%), Gaps = 28/1066 (3%)
Strand=Plus/Plus
Query 1 AGTCGCCTGATACTGG-A--ATTTTCACTTTCTCAAATCAAATCCGATTGa-aaaaaaTC 56
||||||||| |||||| | ||||||| ||||| ||||||||||||||||| | |||| |
Sbjct 8 AGTCGCCTGTTACTGGAATTATTTTCAATTTCTGAAATCAAATCCGATTGAGAGAAAA-C 66
Query 57 CCTCTCTTC-AATTCCGAGATCTGAATTTAAGGATCTCAAGAGGATGACGAAGGATTTCC 115
|| |||| |||| ||||||||||| ||| |||| || ||||||||||||||||||| |
Sbjct 67 ACTAACTTCAAATT-CGAGATCTGAA-TTAGGGAT-TCTAGAGGATGACGAAGGATTTTC 123
Query 116 CAATTCCACCGGTTGTTTTCCCTC-CCAGTGGATCATCTCCGGCCACCGCCAATGTTCAG 174
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 124 CAATTCCACCGGTTGTTTTCCC-CACCAGTGGATCATCTCCGGCCACCGCAAATGTTCAG 182
Query 175 CAACGCCGAGTTCCCACCGCTCCTTACCAACCACCACGTTC-TTCCCCCGGTTCATTTTC 233
||||||||||||||||| |||||||||||||||||||| || ||| ||| ||||| |||
Sbjct 183 CAACGCCGAGTTCCCACAGCTCCTTACCAACCACCACG-TCAATCCTCCGCTTCATCTTC 241
Query 234 AATCCCTTTCATGCCATCTGAAATCGGATCCTCCGTCGCCACTTCAACGCCGGCCGGACC 293
|||||||||||| |||| |||||||||| |||| |||| ||||| |||||| |||||
Sbjct 242 AATCCCTTTCATTCCATTTGAAATCGGA---TCCGCCGCCGTTTCAATGCCGGCGGGACC 298
Query 294 ATTCAG-CGGAACAATCTCTTCTTCTTCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 352
|||| | |||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 299 ATTC-GACGGAACAATCGCTTCATCTGCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 357
Query 353 AAGATGAGGAGCCTTTACTCGACGAGCTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 412
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 AGGATGAGGAGCCTTTACTCGACGAACTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 417
Query 413 CTAGATCGATTCTTAATCC-CTTCAGGATTAATCAGACTGTTCACAAAGATTCAGACCTC 471
||||||||||||| ||||| ||| | || |||||||||||||||||||||||||| |||
Sbjct 418 CTAGATCGATTCTCAATCCTTTTC-GAATCAATCAGACTGTTCACAAAGATTCAGATCTC 476
Query 472 TCTGGTCCGATCTTCTTGTACCTTGCGCTTTGCTTATTTCAGCTT-CTCGCTGGGAAGAT 530
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 477 TCTGGTCCGATCTTCTTATACCTTGCGCTTTGCTTATTTCA-ATTGCTCGCTGGGAAGAT 535
Query 531 TCAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCCTCTATCTTCTTGTACATTGTCTT 590
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 536 ACAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCTTCTATCTTCTTGTACATTGTCTT 595
Query 591 CAATATGCTTGCTGGTCGAAATGGGAATCTTAATCTTCATACTTGTACGAGCTTAGTTGG 650
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 CAATATGCTTGCTGGTAGAAATGGGAATCTTAATCTTCATACTTGTACGAGTTTAGTTGG 655
Query 651 TTACTCTCTGCTTCCGGTTGTGATTTTGTCGGCGGTGTCGTTGTTTGTGCCACAAGGTGC 710
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 656 TTACTCTCTGCTTCCCGTTGTGATTTTGTCCGCGGTGTCCTTGTTTGTGCCACAAGGTGC 715
Query 711 TGGTCCGGTTCGGTTTGTGCTCGGTGCGGCGTTCGTGTTGTGGGCTACTAGAGCTTGTTC 770
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 TGGTCCCGTTCGGTTTGTGCTCGGTGCGGCTTTCGTGTTGTGGGCTACTAGAGCTTGTTC 775
Query 771 TAATCTGGTGGTGTCTCTTGCTGACGGAGGAGAAGAGCACCGTGGTTTGATATCGTACGC 830
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 776 TAATCTGGTGGTGTCTCTTGCTGATGGAGGAGAAGAGCACCGTGGATTGATTTCGTACGC 835
Query 831 TTGTTTTTTGATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTTCTTGCTTTCGA 890
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 CTGTTTCTTAATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTCCTTGCTTTCGA 895
Query 891 ATATTGATAGATGGATTGTTGATCTTTCCGGTGCCATTACGGAGTAGCTTAATGTGAAAT 950
|||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 896 ATATTGATAGAT---T-GTTGAACTTTCCGGTGCCATTACTGAGTAGCTTAATGTGATAT 951
Query 951 CTTGAAAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTTTGATAATTTTAG 1010
||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 952 CTT-ATAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTT-GATAACTTTAG 1009
Query 1011 AGGAAGTTGTTGTTGATATGGTTTAAGTAATTGGATTTGATGTTCT 1056
||||||||||| ||||| ||||||||||||||| | |||||||||
Sbjct 1010 AGGAAGTTGTTATTGATGTGGTTTAAGTAATTGAAGATGATGTTCT 1055
> AT2G36300.1 | Symbols: | Integral membrane Yip1 family protein
| chr2:15213022-15214272 REVERSE LENGTH=1251
Length=1251
Score = 643 bits (348), Expect = 0.0
Identities = 658/802 (82%), Gaps = 43/802 (5%)
Strand=Plus/Plus
Query 94 AAGAGGATGACGAAGGATTTCCCAATTCCACCGGTTGTTTT-CCCTCCCAGTGGATCATC 152
|||| |||||||||||||||| || ||||||| || ||||| |||| || ||||||| |
Sbjct 138 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCT-CCGGTGGATC-T- 194
Query 153 TCCGGCCACCGCCAATGTTCAGCAACGCCGAGTTCCCACCG-CTCC-TTACCAACCACCA 210
|| || | || ||||| |||||||| || |||||| || | || || ||||| |
Sbjct 195 TCAGG-CGGTGCTAATGTCCAGCAACGAAGA-TTCCCAGCGACACCGTT-TCAACC-GC- 249
Query 211 CGTTCTTCCCCCGGTTCATT-TTCAATCCCTTTCATGCCA-TCTGAAATCGGATCCTCCG 268
|| | |||| | ||| || |||||||||||||| || || || || |||||| | |
Sbjct 250 CG--CGTCCCTC--TTC-TTCCGCAATCCCTTTCATGTCATTC-GACATTGGATCCGCAG 303
Query 269 TCGCCACTT---CAACGCCGGCCGGACCATTCAGCGGAACAATCTCTTCTTCTTCATCTT 325
||| ||| | || || |||||||||||| |||| |||||| |||| ||||| ||||
Sbjct 304 CCGCGTCTTCCGCTACACCTGCCGGACCATTCGGCGGGACAATCGCTTCCTCTTCTTCTT 363
Query 326 TCGGTAGAGGAGTCTCTGCTTCGTTTGAAGATGAGGAGCCTTTACTCGACGAGCTCGGTA 385
| ||| || | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 TTGGTGGA-G-GT-TCAGCTTCGTTTGAAGATGAGGAGCCATTACTCGACGAGCTCGGTA 420
Query 386 TCCATCCAGATCAAATCTGGAAGAAAACTAGATCGATTCTTAATCCCTT-CAGGATTAAT 444
||||||||||||||||||||||||| |||||||||||||| ||||| || | |||||||
Sbjct 421 TCCATCCAGATCAAATCTGGAAGAAGACTAGATCGATTCTCAATCCTTTTC-GGATTAAC 479
Query 445 CA-GACTGTTCACAAAGATTCAGACCTCTCTGGTCCGATCTT-CTTGTACCTTGCGCTTT 502
|| | ||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 480 CAAG-CTGTTCACAAAGATTCAGATCTATCTGGTCCGATCTTTCT-GTACCTTGCGCTTT 537
Query 503 GCTTATTTCAGCTTCTC-GCTGGGAAGATTCAGTTTGGTGTTATACTTGGTTGGGTTGTT 561
||||||||||| || | ||||| ||||| ||||| ||||| |||||||| ||| | ||
Sbjct 538 GCTTATTTCAG-TTGTTAGCTGGTAAGATCCAGTTCGGTGTCATACTTGGATGGATCGTC 596
Query 562 GTTTCCTCTATCTT-CTTGTACATTGTCTTCAATATGCTTGCTGGTCGAAATGGGAATCT 620
|| ||||||||||| || ||| | ||||| || |||||||||||| |||||||||| ||
Sbjct 597 GTCTCCTCTATCTTTCTA-TACGTCGTCTTTAACATGCTTGCTGGTAGAAATGGGAACCT 655
Query 621 TAATCTTCATACTTGTACGAGCTTAGTTGGTTACTCTCTGCTTCCGGTTGTGATTTTGTC 680
|||||| ||||| ||||||||||| || || |||| | |||||||||| ||| |||| ||
Sbjct 656 TAATCTCCATACGTGTACGAGCTTGGTCGGATACTGTTTGCTTCCGGTGGTGGTTTTATC 715
Query 681 GGCGGTGTCGTTGTTTGTGCCACAAGGTGCTGGTCCGGTTCGGTTTGTGCTCGGTGCGGC 740
||||||||| ||||| || || || || || || ||||||||||||||||| ||||||
Sbjct 716 GGCGGTGTCATTGTTCGTTCCCCAGGGAGCAGGGCCGGTTCGGTTTGTGCT---TGCGGC 772
Query 741 ---GTTCGTGTTGTGGGCTACTAGAGCTTGTTCTA-ATCTGGTGGTGTCTCTTGCTGACG 796
||| ||||||||| | |||||||| || |||| || ||||||| ||||||||||| |
Sbjct 773 TTTGTTTGTGTTGTGGTCCACTAGAGCCTGCTCTACAT-TGGTGGTATCTCTTGCTGATG 831
Query 797 GAGGAGAAGAGCACCGTGGTTTGATATCGTACGCTTGTTTTTTGATCTATACTCTGTTTT 856
| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||| || |
Sbjct 832 GTGGAGAAGAGCACCGTGGCTTGATCGCGTACGCTTGTTTCTTGATCTATACTCTCTTCT 891
Query 857 CGCTTCTCGTTATCTTTTGATT 878
| ||||| ||||| ||||||||
Sbjct 892 CTCTTCTTGTTATATTTTGATT 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5