BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485651

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52790.1 | Symbols:  | peptidoglycan-binding LysM domain-con...   573    4e-163


> AT3G52790.1 | Symbols:  | peptidoglycan-binding LysM domain-containing 
protein | chr3:19565867-19566354 REVERSE LENGTH=488
Length=488

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 342/358 (96%), Gaps = 0/358 (0%)
 Strand=Plus/Plus

Query  1    ATATAATTCAGAATGGGTAAGAGTTCTTCCATGGCAGTAGCAGAGAAGATCTCTTGGTAC  60
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  10   ATATAATTCAGAATGGGAAAGAGTTCTTCCATGGCAGTAGCGGAGAAGATCTCTTGGTAC  69

Query  61   TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCAGAGGAGGGT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  70   TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCACAGGAGGGT  129

Query  121  TCCACGGAGATCGTAGAGCAACAACAGCCGTCGATGATGATCACCGGATATTCTGATCGA  180
            |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct  130  TCCACGGAGATCGTGGAGAAACAACAGCCGTCAATGATGATCACCGGATATTCTCATCGA  189

Query  181  CGGCCAGCATGTGATGAGATTTATGAAGTGAAAGAAGGAGAGACGTTGCAGACGATAAGT  240
            ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  190  CGGCCAGCATGCGATGAGATATATGAAGTGAAAGAAGGAGAGACGTTGCAAACGATAAGT  249

Query  241  GAGAAGTGTGGAGATCCTTACATTGTTGAAGGGAATCCTCATATACATGACCACGATGAT  300
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  250  GAAAAGTGTGGAGATCCTTACATAGTTGAAGGGAATCCTCATATACATGACCACGATGAT  309

Query  301  CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCTTTTTAATCTCAAGTGATTATGT  358
            |||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||
Sbjct  310  CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCACTCTAATCTCAAGTGATAATGT  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16789428166


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5