BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485652
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family prote... 1485 0.0
> AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr3:19569311-19570682 FORWARD LENGTH=1129
Length=1129
Score = 1485 bits (804), Expect = 0.0
Identities = 1019/1111 (92%), Gaps = 61/1111 (5%)
Strand=Plus/Plus
Query 1 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGtctctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGTCTCTGTT 87
Query 61 ttcgccgttgttt-c--cttcttcttc-tc-tctttctctttcttatatctcctttttct 115
||||||||||||| | |||||||||| || |||||||||||||||||||| |||||||
Sbjct 88 TTCGCCGTTGTTTCCTTCTTCTTCTTCTTCTTCTTTCTCTTTCTTATATCT--TTTTTCT 145
Query 116 cttcccaattctctcatcgatcactgaa---tcttcttcttcttcttccttctctCAAGA 172
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 146 CTTCCCAATTTTCTCATCGATCACTGAATCTTCTTCTTCTTCTTCTTCCTTCTCTCAAGA 205
Query 173 ACAGGTAAATTATTTTCAACGAGCTTGATCGATAAATTCTCTCAAGATCCATGGCGGAAG 232
||| | | || |||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 206 ACA-G--ATTTTTTTTAAACGAGCTTGATCAATAAATTCTCTCAAGATCTATGGCGGAAG 262
Query 233 AACATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 292
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 AGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 322
Query 293 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTTTGCCTCAAACAAC 352
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 323 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGTCTCAAACAAC 382
Query 353 AACAACAA---TCCTCCATCAAATCCACCGTCGAATCTTCCCTCTCCGTATCTCCTCCTT 409
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 383 AACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTATCTCCTCCGT 442
Query 410 CATCATCATCGGAGATCGCTTCCATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAACTC 469
| |||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 443 CGTCATCATC----ATCG--GAGATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAAATC 496
Query 470 CCTCCGTCAAGCTAGAGGTACCGGAGAAAAAGCCGGTGAATT--C-GCCG-C--CGGAGC 523
| || ||||||||||||||||||||||||||| |||||| || | |||| | ||||||
Sbjct 497 CATCAGTCAAGCTAGAGGTACCGGAGAAAAAGGCGGTGATTTCGCTGCCGACGACGGAGC 556
Query 524 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGAAAACGGGTCGGGTTAACCG 583
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 557 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGGAAACGGGTCGGGTTAACCG 616
Query 584 GATTCAAGTGCCGGTGCGGTACGATGTTTTGTGGGGTCCATAGGTACCCGGAGATCCATG 643
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 617 GATTCAAGTGCCGGTGCGGTACGATGTTTTGCGGGGTTCATAGGTACCCGGAGATCCATG 676
Query 644 GATGCAGCTACGATTTCAAATCGGCCGGTCGTGAAGAGATCGCGAAAGCGAATCCGTTGG 703
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 677 GATGCAGCTACGATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGG 736
Query 704 TGAAAGCAGCGAAGCTTCAGAAGATTTGATCAGAGCCGTTCGATGCGTTGAC-TTT--TC 760
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 737 TGAAAGCAGCGAAGCTTCAGAAGATATGATCAGAGCCGTTCGATGCGTTGACTTTTCCTC 796
Query 761 TCGTAAGTCTTCAATTTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 820
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TCGTAAGTCTTC-A-TTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 854
Query 821 GTGTCGA--T--TTGATCTCAGCCGTTGGATC--AAATGGTTTATTATTGTAAAAGATTG 874
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 855 GTGTCGATTTGATTGATCTCAGCCGTTGGATCAAAAATGGTTTATTATTGTAAAAGATTG 914
Query 875 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGATGctttcgctt 934
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 915 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGACGCTTTCGCTT 974
Query 935 tcttcttcattttcctttaattttattttctttttcctt-cAGAAAGAAATAAGATTATT 993
| |||| | || | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 975 T-TTCTCC-TT--C----A-TTTTATTTTCTTTTTCCTTTCAGAAAGAAATAAGATTATT 1025
Query 994 CGCGTTGGCttttttttttttttttttttttttAATTCCGGCTTATTATTATTATT---G 1050
|||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 1026 CGCGTTGGCTTTTTCTTTTTATTA---------AATTCCGGCTTATTATTATTATTATTG 1076
Query 1051 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1081
|||||||||||||||||||||||||||||||
Sbjct 1077 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5