BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485653
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52810.1 | Symbols: ATPAP21, PAP21 | purple acid phosphatase... 2226 0.0
> AT3G52810.1 | Symbols: ATPAP21, PAP21 | purple acid phosphatase
21 | chr3:19570961-19573733 REVERSE LENGTH=1535
Length=1535
Score = 2226 bits (1205), Expect = 0.0
Identities = 1363/1438 (95%), Gaps = 16/1438 (1%)
Strand=Plus/Plus
Query 1 TTCACCAACATCAACTCTTTGAAAATGAAGATGATGAAAATCTTTGGTCTCTTAATTAGC 60
|||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 70 TTCACCGACATCAACTCTTTGAAAATGAAGAAGATGAAAATATTTGGTTTCTTAATTAGC 129
Query 61 TTTTCTCTCCTTTTGCTCTCTCCGTTTGTATGTCAAGCTAACTATGATTCGAACTTCACC 120
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 130 TTTTCTCTCTTTTTCCTCTCTCCGTTTGTATGTCAAGCTAACTATGATTCAAACTTCACC 189
Query 121 CGCCCGCCACCTCGTCCCCTCTTCATTGTCTCTCACGGGCGTCCAAAGTTCCATCCTCAA 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 190 CGCCCGCCGCCTCGTCCTCTCTTCATTGTCTCTCACGGGCGTCCAAAGTTCTATCCTCAA 249
Query 181 CAGGTACACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACGGACGAC 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 250 CAGGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGAC 309
Query 241 ATGCATGTGGCATCGATGGTGGAGTACGGTAAACATCCAAAAAAGTACGACAAGAAAACC 300
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 310 TTGAATGTGGCATCGATGGTGGAGTACGGTAAACATCCAAAAAAGTATGACAAAAAAACG 369
Query 301 GCCGGAGAATCTACTTCTTACAGATACTTCTTCTACAACTCTGGCAAGATCCACCATGTC 360
||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 370 GCCGGAGAATCCACTTCTTACACATACTTCTTCTACAACTCTGGAAAGATCCATCATGTC 429
Query 361 AAGATTGGTCCTCTTCAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 489
Query 421 GAATTTTCTTTCAAAAC-CCCTCCATCCAAATTTCCGATCGAATTTGCCGTCGCTGGTGA 479
||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 490 GAATTTTCTTTCAAAACTCCC-CCATCCAAATTTCCAATCGAATTCGCCGTCGCTGGTGA 548
Query 480 CCTAGGCCAAACCGATTGGACATTAAGCACATTAGATCAGATGA-TGAAACGGGACTTCG 538
||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||
Sbjct 549 CCTAGGCCAAACCGATTGGACCGTAAGAACATTAGATCAGAT-ACGGAAACGGGACTTCG 607
Query 539 ATGTTTTCCTACTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCACTTTGGGACT 598
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCACTTTGGGACT 667
Query 599 CCTTTGGCCGCCTCTTAGAGACTTTGGCTAGCACCCGCCCGTGGATGGTCACGGAGGGGA 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 CCTTTGGCCGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGTGGATGGTCACGGAGGGGA 727
Query 659 ACCACGAGATCGAGTCTTTCCCGATCAATGACCACATAAGCTTCACGTCCTACAATGCGC 718
|||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||
Sbjct 728 ACCACGAGATCGAGTCTTTCCCAACCAATGACCACATAAGCTTCAAGTCATACAATGCGC 787
Query 719 GATGGCTCATGCCTCACGCTGAGAGCCTCTCTCACTCCAATCTTTACTATTCTTTTGATG 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 GATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATTCTTTTGATG 847
Query 779 TAGCAGGCGTCCACACGGTTATGCTTGGTTCTTACACCCCCTATGACTCCCACTCCGATC 838
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 848 TAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCCACTCCGATC 907
Query 839 AGTATCAGTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGCCATGGTTGG 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGTATCATTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGCCATGGTTGG 967
Query 899 TGGTGGTGATGCACATGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAAGGAGAGA 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAAGGAGAGA 1027
Query 959 AAATGAGAAATGCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGTTTTTGCCG 1018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AAATGAGAAGTGCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGTTTTTGCCG 1087
Query 1019 GCCACGTTCATACCTACGAACGTTTCAAGCCGATATACAACAAGAAGGCCGACCCATGTG 1078
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1088 GCCACGTTCATACCTACGAACGTTTCAAGCCGATATACAACAAGAAAGCCGATCCATGTG 1147
Query 1079 GACCAATGTACATAACCATCGGTGACGGTGGCAACCGAGAAGGCCTTGCTTTACGGTTCA 1138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GACCAATGTACATAACCATTGGTGACGGTGGCAACCGAGAAGGCCTTGCTTTACGGTTCA 1207
Query 1139 AAAAGCCTCAGTCACCTTTGTCGGTATTCCGTGAATCGAGTTTTGGGCATGGGAGATTAA 1198
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1208 AAAAGCCTCAGTCACCTTTGTCGGAATTCCGTGAATCGAGTTTTGGACATGGGAGATTAA 1267
Query 1199 GGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAACGACGCGATGTCAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1268 GGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAACGACGAGATGTCAT 1327
Query 1259 TTATTGCCGATGAAGTATCTTTCGAAAGCCCTAGAGCATCATCACATTGTCGTTCAAATC 1318
|||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 1328 CTATTGCCGATGAAGTATCGTTCGAAAGCCCTAGAACATCATCGCATTGTCATTCAAATC 1387
Query 1319 GTTTTAGAGGTGAGATCTAATTCACC--AT-AT----CATT-AA--TCAT-TT-TCTTAT 1366
||| |||||||||||||||| ||||| || || |||| || || | || ||| ||
Sbjct 1388 GTTATAGAGGTGAGATCTAAATCACCGTATCATAAAACATTTAAGCTCTTGTTATCTAAT 1447
Query 1367 GTTTTGTAGAAAAATAACTCAAAAGGTAAATTTATATAAATCTTTTAATTAATTAATA 1424
|||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 1448 GTTTTGTAGAAAAATAACTCAAAAAGTAAATTTATATAAATCTTTTAGTTACTTAATA 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5