BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485654
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52820.1 | Symbols: ATPAP22, PAP22 | purple acid phosphatase... 2087 0.0
AT3G52810.1 | Symbols: ATPAP21, PAP21 | purple acid phosphatase... 876 0.0
> AT3G52820.1 | Symbols: ATPAP22, PAP22 | purple acid phosphatase
22 | chr3:19573944-19576977 REVERSE LENGTH=1636
Length=1636
Score = 2087 bits (1130), Expect = 0.0
Identities = 1319/1411 (93%), Gaps = 9/1411 (1%)
Strand=Plus/Plus
Query 1 AACTTTTACTCTTTAAACAAGAAAATGAAACTTCTTGGTCTCTTCTTTCTTAGTTTTACT 60
||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||
Sbjct 16 AACTTTTACTCTTTAAACAAGAAGATGAAACTTTTTGG--TC-TCTTTCTTAGTTTTACT 72
Query 61 CTCTTGTTCCTTTGTCCGTTCATATCTCAAGCCGATGTACCTGAACGTAGCCGCGAGCCG 120
|||||||| ||||||||||||||||||||||||||||| || |||| ||||||| |||||
Sbjct 73 CTCTTGTTTCTTTGTCCGTTCATATCTCAAGCCGATGTGCCGGAACTTAGCCGCCAGCCG 132
Query 121 CCTCGTCCCATCGTCTTCGTCCATAATGACCGCTCCAAATCCGATCCGCAACAGGTGCAT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CCTCGTCCCATCGTATTCGTCCATAATGACCGCTCCAAATCCGATCCGCAACAGGTGCAC 192
Query 181 GTATCATTGGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAACAAGGTG 240
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATATCGTTAGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAACAAGGTG 252
Query 241 GAGTCGGTGGTGGAATACGGTAAACAACCAGGAAACTACGATGGAAAAGCCACCGGAGAA 300
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 253 GAGTCGGTAGTGGAATACGGTAAACAACCAGGAAAGTACGACGGAAAAGCCACCGGAGAA 312
Query 301 TGCACTTCTTACAAATACATT-TTCTACAAATCCGGAAAAATCCACCACGTCAAGATTGG 359
|||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| ||
Sbjct 313 TGCACTTCTTACAAATAC-TTCTTCTACAAATCCGGCAAAATCCACCATGTCAAGATCGG 371
Query 360 ACCTCTCCAACCCAACACCACTTACTACTACCGTTGTGGCGGAAACGGCCCTGAATTTTC 419
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 372 ACCTCTCCAAGCCAACACCACTTACTACTACCGTTGTGGCGGCAACGGCCCTGAATTTTC 431
Query 420 TTTCAAGACCCCTCCGTCAACTTTTCCGGTCGAGTTCGCAATCGTAGGCGACCTAGGCCA 479
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 TTTCAAGACCCCTCCATCAACTTTTCCTGTCGAGTTCGCAATCGTAGGCGACCTAGGCCA 491
Query 480 AACCGAATGGACAGCAGCAACATTATCTCAGGTAAAGAGTCAAGACTACGACGTCTTTCT 539
||||||||||||||||||||| |||||||| |||| || |||||||||||||| |||||
Sbjct 492 AACCGAATGGACAGCAGCAACGTTATCTCATATAAATAGCCAAGACTACGACGTGTTTCT 551
Query 540 ACTTCCTGGCGACCTCTCCTATGCTGACACT-AGCCAGCCACTTTGGGACTCCTTTGGTC 598
||||||||| ||||| ||||| || |||||| | ||||||||| ||||||||||||||||
Sbjct 552 ACTTCCTGGAGACCTATCCTACGCCGACACTCA-CCAGCCACTCTGGGACTCCTTTGGTC 610
Query 599 GCCTGGTGGAGCCACTCGCGAGCCAGCGTCCTTGGATGGTTACTGAAGGAAACCACGAGA 658
|||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 611 GCCTAGTGGAGCCACTAGCGAGCAAGCGTCCTTGGATGGTTACTGAAGGAAACCACGAAA 670
Query 659 TCGAGTTCTTCCCAATCTTTGAACACACAACCTTCAAGTCATACAATGCCCGGTGGCTCA 718
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 671 TCGAATTCTTCCCAATCATTGAACACACAACCTTCAAGTCATACAATGCTCGGTGGCTCA 730
Query 719 TGCCTCACACCGAGAGCCTCTCTGA-CTCCAACCTGTACTACTCTTTTGACGTAGCCGGT 777
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 731 TGCCTCACACCGAGAGCTTCTCT-ACCTCCAACCTGTACTACTCTTTTGACGTAGCCGGT 789
Query 778 GTCCACACCGTTATGCTTGGTTCTTACACCGACTTTGATTCTGATTCTGATCAGTATCAA 837
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct 790 GTCCACACTGTTATGCTTGGTTCTTACACCGACTTTGACTGTGAATCCGATCAGTATCAA 849
Query 838 TGGCTCCAGGCCGATCTAGCAAAGGTTGACCGTAAAACGACGCCGTGGGTGGTGGTGTTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TGGCTCCAGGCCGATCTAGCAAAGGTTGACCGTAAAACGACGCCGTGGGTGGTGGTGTTG 909
Query 898 CTGCATGCTCCGTGGTACAACACGAATGAGGCACATGAAGGCGAAGGAGAGAGCATGAGG 957
||||| || |||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 910 CTGCACGCCCCGTGGTACAACACAAACGAGGCACATGAAGGTGAAGGAGAGAGCATGAGG 969
Query 958 GTAGCTATGGAGTCTTTGCTCTTTAGTGCTCGAGTCGACGTCGTCTTTTCCGGCCATGTT 1017
| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 970 GAAGCTATGGAGTCTCTGCTCTTTAATGCTCGAGTCGACGTCGTCTTTTCTGGCCATGTT 1029
Query 1018 CATGCCTACGAACGTTTCAAACGTGTATATAACAACAAGGCCGACCCATGTGGGCCTATA 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1030 CATGCCTACGAACGTTTCAAACGTGTATATAACAACAAGGCCGACCCCTGTGGGCCTATA 1089
Query 1078 TACATTACCATCGGTGACGGAGGCAACCGAGAAGGCCTTGCTTTATCGTTCAAGAAGCCT 1137
||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 1090 CACATTACCATCGGTGACGGCGGTAACCGAGAGGGCCTTGCTTTATCATTCAAGAAGCCT 1149
Query 1138 CCTTCACCTTTATCGGAATATCGCGAATCGAGTTTTGGACATGGAAGATTGAAGGTTATG 1197
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1150 CCTTCACCTTTATCGGAATTTCGCGAATCGAGTTTTGGACATGGGAGATTGAAGGTTATG 1209
Query 1198 GACGGGAAACGAGCACATTGGTCATGGCATAGAAACAATGACTCGAACTCACTTCTTGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GACGGGAAACGAGCACATTGGTCATGGCATAGAAACAATGACTCGAACTCACTTCTTGCT 1269
Query 1258 GATGAAGTCTGGCTTGAGAGTCTTAGCACATCATCGTCATGTTGGCCTTCGAGTCGTTCC 1317
||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1270 GATGAGGTCTGGCTTGATAGTCTTAGCACATCATCATCATGTTGGCCTTCAAGTCGCTCC 1329
Query 1318 AGTGATGAGCTCTAAATCATCATACCAAAAAACGTTTTATACTTATTTTATTCATTGGAT 1377
| |||||||||||| ||||||||||| |||| || || ||||| |||| |||| |||
Sbjct 1330 AATGATGAGCTCTAGATCATCATACCCGAAAATGTCTTGTACTTCTTTTGCTCATCGGAG 1389
Query 1378 CGCTGGTAGAATAGCAAGGAACTACAAATAT 1408
|||| ||||||||| |||||||||| |||||
Sbjct 1390 CGCTCGTAGAATAGTAAGGAACTACGAATAT 1420
> AT3G52810.1 | Symbols: ATPAP21, PAP21 | purple acid phosphatase
21 | chr3:19570961-19573733 REVERSE LENGTH=1535
Length=1535
Score = 876 bits (474), Expect = 0.0
Identities = 1089/1380 (79%), Gaps = 66/1380 (5%)
Strand=Plus/Plus
Query 8 ACTCTTT--AAA-CAAGAAAATGAAACT-TCTTGGTCTCTTCTTTCTTAG-TTTTACTCT 62
||||||| ||| ||||| |||||| | | |||| | ||||| |||| |||| ||||
Sbjct 83 ACTCTTTGAAAATGAAGAAGATGAAAATAT-TTGG--T-TTCTTAATTAGCTTTT-CTCT 137
Query 63 CTTGTTCCTTTGTCCGTTCATATCTCAAGC---CGATGTACCT-GAACGT-AGCCGCGAG 117
||| ||||| | |||||| ||| |||||| | ||| | | ||| | | |||| |
Sbjct 138 CTTTTTCCTCTCTCCGTTTGTATGTCAAGCTAACTATG-A-TTCAAACTTCACCCGCCCG 195
Query 118 CCGCCTCGTCC-CATCGTC-TTCGTC-CATAATGACCGCTCCAAA-TCCGATCCGCAACA 173
||||||||||| | || || || ||| | | | | || |||||| | | |||| |||||
Sbjct 196 CCGCCTCGTCCTC-TCTTCATT-GTCTC-TCACGGGCG-TCCAAAGTTCTATCCTCAACA 251
Query 174 GGTGCATGTATCATTGGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAA 233
|||||| |||||||||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 252 GGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGACTT 311
Query 234 CAAGGTGG-AGTCGGTGGTGGAATACGGTAAACAACCAGGAAACTACGATGGAAAAGCCA 292
|| |||| | ||| ||||||| ||||||||||| ||| ||| || || |||| |
Sbjct 312 GAATGTGGCA-TCGATGGTGGAGTACGGTAAACATCCAAAAAAGTATGACAAAAAAACGG 370
Query 293 CCGGAGAATGCACTTCTTACAAATACATT-TTCTACAAATCCGGAAAAATCCACCACGTC 351
||||||||| ||||||||||| |||| || |||||||| || ||||| ||||| || |||
Sbjct 371 CCGGAGAATCCACTTCTTACACATAC-TTCTTCTACAACTCTGGAAAGATCCATCATGTC 429
Query 352 AAGATTGGACCTCTCCAACCCAACACCACTTACTACTACCGTTGTGGCGGAAACGG-CCC 410
|||||||| ||||| |||||||||||| ||||| ||||||||||| || |||| |
Sbjct 430 AAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 489
Query 411 TGAATTTTCTTTCAAGAC-CCCTCCGT-CAACTTTTCCGGTCGAGTTCGCAATCG-TAGG 467
|||||||||||||| || ||| || | ||| ||||| |||| ||||| ||| | ||
Sbjct 490 -GAATTTTCTTTCAAAACTCCC-CCATCCAA-ATTTCCAATCGAATTCGCCGTCGCT-GG 545
Query 468 CGACCTAGGCCAAACCGAATGGACAG-CAGCAACATTATCTCAGGTAAAGAGTCAAGACT 526
||||||||||||||||| ||||| | || ||||||| |||| || || | ||||
Sbjct 546 TGACCTAGGCCAAACCGATTGGACCGTAAG-AACATTAGATCAGATACGGAAACGGGACT 604
Query 527 ACGACGTCTTTCTACTTCCTGGCGACCTCTCCTATGCTGACA-CTAGCCAGCCACTTTGG 585
||| ||||| || ||||| || ||||||||||| || |||| | | |||||||||||||
Sbjct 605 TCGATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCA-CCAGCCACTTTGG 663
Query 586 GACTCCTTTGGTCGCCTGGTGGAGCCACTCGCGAGCCA-GCGTCCTTGGATGGTTACTGA 644
||||||||||| ||||| | ||| | | || || || || || |||||||| || ||
Sbjct 664 GACTCCTTTGGCCGCCTCTTAGAGACTTTAGCTAG-CACCCGCCCGTGGATGGTCACGGA 722
Query 645 AGGAAACCACGAGATCGAGTTC-TTCCCAATCTTTGAACACACAACCTTCAAGTCATACA 703
|| ||||||||||||||| || ||||||| | ||| |||| || ||||||||||||||
Sbjct 723 GGGGAACCACGAGATCGAG-TCTTTCCCAACCAATGACCACATAAGCTTCAAGTCATACA 781
Query 704 ATGCCCGGTGGCTCATGCCTCACACCGAGAGCCTCTCTGACTCCAACCTGTACTACTCTT 763
|||| || ||||||||||||||| | ||||| |||||| ||||||| || ||||| ||||
Sbjct 782 ATGCGCGATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATTCTT 841
Query 764 TTGACGTAGCCGGTGTCCACACCGTTATGCTTGGTTCTTACACCGACTTTGATTCTGATT 823
|||| ||||| || |||||||||||||||||||||||||||||| || ||| || | |
Sbjct 842 TTGATGTAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCCACT 901
Query 824 CTGATCAGTATCAATGGCTCCAGGCCGATCTA-GCAAAGGTTGACCGTAAAACGACGCCG 882
| ||||||||||| |||||||| || ||| || | ||||||||||||||||| ||||||
Sbjct 902 CCGATCAGTATCATTGGCTCCAAGCTGATTTAAG-AAAGGTTGACCGTAAAAAGACGCCA 960
Query 883 TGGGTGGTGGTGTTGCTGCATGCTCCGTGGTACAACACGAATGAGGCACATGAAGGCGAA 942
||| |||||||| || |||| | || ||||||| || || |||| ||| | || |||
Sbjct 961 TGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAA 1020
Query 943 GGAGAGAGCATGAGG-GTAGCTATGGAGTCTTTGCTCTTTAGTGCTCGAGTCGACGTCGT 1001
||||||| ||||| || || ||||| |||||||| | |||||| ||| ||||||||
Sbjct 1021 GGAGAGAAAATGAGAAGT-GCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGT 1079
Query 1002 CTTTT-CCGGCCATGTTCATGCCTACGAACGTTTCAAAC-GTGTATATAACAACAAGGCC 1059
|||| ||||||| |||||| |||||||||||||||| | | |||| ||||| || |||
Sbjct 1080 -TTTTGCCGGCCACGTTCATACCTACGAACGTTTCAAGCCGA-TATACAACAAGAAAGCC 1137
Query 1060 GACCCATGTGGGCCTATATACATTACCATCGGTGACGGAGGCAACCGAGAAGGCCTTGCT 1119
|| |||||||| || || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1138 GATCCATGTGGACCAATGTACATAACCATTGGTGACGGTGGCAACCGAGAAGGCCTTGCT 1197
Query 1120 TTATCG-TTCAAGAAGCCTCCTTCACCTTTATCGGAATATC-GCGAATCGAGTTTTGGAC 1177
||| || ||||| ||||||| |||||||| ||||||| || | ||||||||||||||||
Sbjct 1198 TTA-CGGTTCAAAAAGCCTCAGTCACCTTTGTCGGAAT-TCCGTGAATCGAGTTTTGGAC 1255
Query 1178 ATGGAAGATTGAAGG-TTATGGACGGGAAACGAGCACATTGGTCATGGCATAGAAACAAT 1236
|||| ||||| |||| |||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 1256 ATGGGAGATT-AAGGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAAC 1314
Query 1237 GACTCGAACTCA-CTTCTTGCTGATGAAGTCTGGCTT-GAGAGTCTTAGCACATCATCGT 1294
||| || ||| || |||| |||||||| | | || || || | ||| |||||||||
Sbjct 1315 GACGAGATGTCATCTA-TTGCCGATGAAGTATCG-TTCGAAAGCCCTAGAACATCATCG- 1371
Query 1295 CATGTTGGCCTTCGAGTCGTTCCAGTGATGAGCTCTAAATCATCATACCAAAAAACGTTT 1354
||| | | | ||| | ||||| || | |||| ||||||||| | || || ||||| |||
Sbjct 1372 CAT-T-GTCATTCAAATCGTTATAGAGGTGAGATCTAAATCACCGTATCATAAAACATTT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5