BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485659
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52880.2 | Symbols: ATMDAR1, MDAR1 | monodehydroascorbate re... 2207 0.0
> AT3G52880.2 | Symbols: ATMDAR1, MDAR1 | monodehydroascorbate
reductase 1 | chr3:19601213-19604454 REVERSE LENGTH=1753
Length=1753
Score = 2207 bits (1195), Expect = 0.0
Identities = 1362/1439 (95%), Gaps = 25/1439 (2%)
Strand=Plus/Plus
Query 140 GGATACGCAGCTAAGGAGTTTGCTAATCAAGGGGTTAAACCAGGAGAATTGGCTGTTATC 199
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 236 GGATACGCAGCTAAGGAGTTTGCCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATC 295
Query 200 TCGAAAGAGGCGGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCGAAAGAGGCGGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCT 355
Query 260 GAAGGGGCTGCTAGACTTCCAGGGTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTG 319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 GAAGGGGCTGCTAGACTTCCAGGTTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTG 415
Query 320 CTTCCTGAATCCTACAAGCAGAAAGGGATTGAGTTGATACTAAGTACAGAAATAGTGAAA 379
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 416 CTTCCTGAATCCTACAAGCAGAAAGGAATTGAGTTGATACTAAGCACAGAAATAGTGAAA 475
Query 380 GCTGATCT-TGCTGCCAAGAGTCTTGTCAGTGCAGCAGGGGATGTCTTCAAATATCAGAC 438
|||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 476 GCTGATCTCT-CTGCCAAGAGTCTTGTCAGTGCAACTGGGGATGTCTTCAAGTATCAGAC 534
Query 439 TCTCATAATTGCAACTGAAAGCTTCTTACAAATTCTTACTGGAGAGGAAACATTGACTGA 498
|||||||||||||||| | ||| ||| | || || | | |||||||||
Sbjct 535 GCTCATAATTGCAACTG---G-TTC-TAC----TGTT-CT---CA-G----ATTGACTGA 576
Query 499 TTTTGGAGTAAAAGGTGCAGACTCTAAGAATATCCTTTATCTGAGGGAGATCGATGACGC 558
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 577 TTTTGGAGTAAAAGGTGCAGACTCTAAGAATATCCTCTATCTGAGAGAGATTGATGATGC 636
Query 559 CGACAAATTGGTTGAAGCAATTAAAGCTAAGAAAGGCGGAAAGGCTGTAGTTGTTGGTGG 618
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 637 CGACAAATTGGTTGAAGCAATTAAAGCTAAGAAAGGTGGAAAGGCTGTAGTTGTTGGCGG 696
Query 619 AGGTTACATTGGTCTTGAGCTTAGTGCAGCTTTGAGGATCAACAATTTTGATGTCACTAT 678
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 697 AGGTTACATTGGTCTTGAGCTTAGTGCAGTTTTAAGGATCAACAATTTAGATGTCACTAT 756
Query 679 GGTTTTCCCTGAACCTTGGTGCATGCCTAGGCTTTTCACCGCCGATATTGCTGCTTTCTA 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GGTTTTCCCTGAACCTTGGTGCATGCCTAGGCTTTTCACCGCCGATATTGCTGCTTTCTA 816
Query 739 TGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTT 876
Query 799 CACTGCTCAGCCAAATGGAGAGGTGAAGGAAGTACAACTTAAGGATGGGAGGACACTGGA 858
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 877 CACAGCTCAGCCAAATGGAGAGGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGA 936
Query 859 AGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACA 996
Query 919 GGTCGAAGAAGACAAAGGTGGAATTAAGACCGATGCATTCTTCAAAACAAGTGTTCCAGA 978
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GGTCGAGGAAGATAAAGGTGGAATTAAGACCGATGCATTCTTCAAAACAAGTGTTCCAGA 1056
Query 979 TGTCTATGCTGTTGGTGACGTTGCCACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAG 1038
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1057 TGTTTACGCTGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAG 1116
Query 1039 GGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGGCGATCAAAGC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGGCGATCAAAGC 1176
Query 1099 GGCTGAGGGAGGTGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTC 1158
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GGCTGAGGGAGGCGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTC 1236
Query 1159 CTTTGACCTCTCGTGGCAGTTCTATGGAGACAACGTAGGAGACTCTGTGTTGTTCGGAGA 1218
|||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1237 CTTTGATCTCTCATGGCAGTTCTACGGAGACAACGTAGGAGACTCTGTGTTATTTGGAGA 1296
Query 1219 CAGCAATCCATCAAACCCAAAACCAAGATTTGGAGCATATTGGGTTCAAGGTGGTAAAGT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CAGCAATCCATCAAACCCAAAACCAAGATTTGGAGCATATTGGGTTCAAGGTGGTAAAGT 1356
Query 1279 GGTTGGAGCATTCATGGAGGGAGGTAGTGGTGACGAGAACAAGGCTTTGGCTAAAGTCGC 1338
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1357 GGTTGGAGCATTCATGGAGGGAGGTAGTGGTGATGAGAACAAAGCCTTGGCTAAAGTCGC 1416
Query 1339 CAAAGCTCGACCTTCTGCAGAGAGTCTTGAGGAGCTCACCAAACAAGGAATTTCGTTCGC 1398
||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||
Sbjct 1417 CAAAGCTCGACCTTCTGCAGAGAGTCTCGACGAGCTCGTGAAACAAGGAATTTCCTTCGC 1476
Query 1399 AGCTAAGATCTGAGTGAAACACAACCACCAAA-CAAACTCGCTTTTTCTCTTCCATGTTA 1457
|||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||
Sbjct 1477 AGCTAAGATCTGAGTGAAACACAACCACCAAAACAAACTCACGTTTTCTCTTCTATGTTA 1536
Query 1458 AAATAAAAACATATTTAGCAAATAATAAGTTGTGTGTTTGTATTGCCTCTCTAAAAACTC 1517
|||||||||| | |||||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 1537 AAATAAAAACTTGTTTAGCTA-TAATAAGTTGTGTGTTTGTATTGTCTCTCTAAA--CTC 1593
Query 1518 TATGAGAAGAGTATACGGCAGAGGAAACC-TGAACCACATTCACATTTTAGATCATGTG 1575
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1594 CATGAGAAGAGTCTACGGCAGAGGAAACCCTGAACCACATTCACATTTTAGATCATGTG 1652
Score = 224 bits (121), Expect = 2e-57
Identities = 133/139 (96%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 CATATTAGCCTTTTTGCTCTTTCTTTTCTTCTCCAACAAACCAACTTCAGCGACGAGATA 60
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1 CATATTAGCCTTTTTGCTCTTTCTTTGCTTCTCTAACAAACCAACTTCAGCGACAAGATA 60
Query 61 ACAAAACGCTTTCAGACGATCGGATAAAATGGCGGAGAAGAGCTTTAAGTACATCATCCT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAAACGCTTTCACACGATCGGATAAAATGGCGGAGAAGAGCTTTAAGTACATCATCCT 120
Query 121 CGGCGGCGGTGTCTCAGCC 139
||||||||| ||||| |||
Sbjct 121 CGGCGGCGGCGTCTCTGCC 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5