BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485662
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52900.1 | Symbols: | Family of unknown function (DUF662) ... 1055 0.0
AT2G36355.1 | Symbols: | Family of unknown function (DUF662) ... 396 2e-109
> AT3G52900.1 | Symbols: | Family of unknown function (DUF662)
| chr3:19613118-19614027 FORWARD LENGTH=686
Length=686
Score = 1055 bits (571), Expect = 0.0
Identities = 646/682 (95%), Gaps = 6/682 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGAGTAGCAAGAACAACTTAGGAGCTGCAGCAGCTTCTGGAGTCAACATCAA 60
||||||||||||||||||||| |||| |||||||| |||| |||||||||||||| |||
Sbjct 10 AAAAAAAATGAGTAGCAAGAATAACTCCGGAGCTGCTGCAGTTTCTGGAGTCAACACCAA 69
Query 61 CGGTAAGTTACCAATGGAGGAGAATGAAGAAGAAGAGATATGGAAAGTTGCAGTGTCGAG 120
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 70 CGGTAAGCTACCAATGGAGGACAATGAAGAAGAAGAGATATGGAAAGTTGCAGTGACGAG 129
Query 121 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAGTTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAGTTCA 189
Query 181 ACAGAGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACCTTGGAAGAGCT 240
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 190 ACAGCGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACATTGGAAGAGCT 249
Query 241 AGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGAATGGTGAGGAAGAAAATCGACAT 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 250 AGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGTATGGTGAGGAAGAAAATCGACAT 309
Query 301 GGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAA 369
Query 361 AGAGACATTGGAAGCTTTCAACGAGAAGAACAAAGAGAAAGCTCACCTTGTTTCCATGTT 420
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 370 AGACACATTGGAAGCTTTCAATGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCCATGTT 429
Query 421 AATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAACAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAACAA 489
Query 481 GACTGTTGGAACCTTGCAATGAGGAGAAGCAATCCACATGGATCTTACCTTGAAAGAGTC 540
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 490 GACTGTTGGAACCTTGCAATGAGGAGAAGCAATCTACATGGATCTTACCTTAAAAGAGAG 549
Query 541 TGAAAATTTGTTTGAGGTTTTTGGTATTAGATTCTATTCAGGTCCTCTCTATCAAACGCG 600
||||||||||||| || |||||||||||| | ||||| ||||||||| |||| ||| | |
Sbjct 550 TGAAAATTTGTTTAAG-TTTTTGGTATTACACTCTATCCAGGTCCTC-CTATTAAAAGTG 607
Query 601 AGCTACAATGTAACAGGATGTACGATAAATGA-TGATTTGCCTAAGGTTTAAAGATATGA 659
|||||| ||||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 608 AGCTACGATGTAACAGGATGTACGATAAATGAATGGT--GC-TAAGGTTTAAAGATATGA 664
Query 660 ATGCAGCGGAAAACAAATTTCT 681
|||||||| ||||| |||||||
Sbjct 665 ATGCAGCGAAAAACGAATTTCT 686
> AT2G36355.1 | Symbols: | Family of unknown function (DUF662)
| chr2:15242376-15243431 FORWARD LENGTH=696
Length=696
Score = 396 bits (214), Expect = 2e-109
Identities = 325/379 (86%), Gaps = 6/379 (2%)
Strand=Plus/Plus
Query 122 TTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAA-AGTTCA 180
||||||||||||||||||||||||||||| ||||||||| | |||||||| || | ||||
Sbjct 161 TTTCAAGCCCGAGAAGAAGAGATCGAGAGAAAGAAGATGGCGGTTAAGGACAAGA-TTCA 219
Query 181 ACAGAGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACCTTGGAAGAGCT 240
|||| | || || |||||||||||||| |||||| |||| || || || ||||||| |||
Sbjct 220 ACAGCGACTTGGGTTTGCAGAGGAAGCCACAAGAAGCTTGACACAGACATTGGAAGGGCT 279
Query 241 AGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGAATGGTGAGGAAGAAAATCGACAT 300
|||||| ||||||||||| ||||| || ||||| || ||||| || ||||||||||| ||
Sbjct 280 AGAGATCATGGGAGATCCAATGAGGAAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGAT 339
Query 301 GGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAA 360
||| |||||||| |||||||||||| | || ||||| ||||| ||||||| |||||||||
Sbjct 340 GGCAAATCGAGAAATCAAATCTTTGTCTCAGAGCTGCCAGAAGAAGGAGAGGGAATACAA 399
Query 361 AGAGA--CATTGGAAGCTTTCAACGAGAAGAACAAAGAGAAAGCTCACCTTGTTTCCATG 418
||||| ||| | | |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct 400 AGAGATACAT-G-AGGCTTTCGACGAAAAGAACAAAGAGAAAGCACACCTTGTTTCAATC 457
Query 419 TTAATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAAC 478
|||||||||||||| ||||||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct 458 TTAATGGAGCTACTAGCTGAAAGTGAAAGAGTAAGGGTGAAGAAGCTGGAAGAGATCAAC 517
Query 479 AAGACTGTTGGAACCTTGC 497
|||||| |||| ||||||
Sbjct 518 AAGACTATTGGGTCCTTGC 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5