BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485670
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52960.1 | Symbols: | Thioredoxin superfamily protein | chr... 1205 0.0
> AT3G52960.1 | Symbols: | Thioredoxin superfamily protein | chr3:19639668-19640619
FORWARD LENGTH=952
Length=952
Score = 1205 bits (652), Expect = 0.0
Identities = 792/854 (93%), Gaps = 31/854 (4%)
Strand=Plus/Plus
Query 1 TTCACCTAAACAGCATCAAATGGCGACTTCTCTCTCCGTTTCTAGATTCA--T-CTCCTC 57
||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 14 TTCACCTAAACAGCATC-AATGGCGACTTCTCTCTCCGTTTCTAGATTCATGTCCTCCTC 72
Query 58 CTCCTCCG------CCATCGCTAAGCCGTTACTATCCCCCACCGTCTCCTTCACCGCGCC 111
| || ||| || |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 73 CGCCACCGTTATCTCCGTCGCTAAGCCGTTACTTTCCCCCACCGTATCCTTCACCGCGCC 132
Query 112 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCCCTCAAATTCCGCAACCGCCGCAC 171
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 133 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCTCTCAAATTCCGCAACCGCCGCAC 192
Query 172 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCCACAACACCCGTCACCGCCTCCATTTC 231
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 193 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCTACGACACCCGTCACCGCCTCCATTTC 252
Query 232 CGTCGGAGACAAGCTCCCAGACTCCACCCTCTCCTACCTCGATCCATCCACCGGAGACGT 291
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 253 CGTCGGAGACAAGCTCCCAGACTCCACTCTCTCCTACCTCGATCCATCCACCGGAGACGT 312
Query 292 CAAAACCGTAACCGTCTCATCCCTAACCGCCGGAAAGAAAACAATCCTATTCGCCGTACC 351
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 313 CAAAACAGTAACCGTCTCATCCCTAACCGCCGGGAAGAAAACAATCCTATTCGCCGTTCC 372
Query 352 CGGAGCATTCACACCAACCTGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCTGG 411
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 373 CGGCGCATTCACACCAACATGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCCGG 432
Query 412 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTTGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 433 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTCGT 492
Query 472 CATGGAAGCGTGGAGGAAAGATCTCGGAATCAACGATGAGGTAATGTTGCTTTCCGATGG 531
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 493 GATGGAAGCGTGGAGGAAAGATCTTGGAATTAACGATGAGGTAATGTTGCTATCCGATGG 552
Query 532 TAACGGTGAATTCACAGGGAAGCTTGGAGTTGAATTGGATTTGAGGGATAAGCCTGTAGG 591
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 553 AAATGGCGAATTCACAGGGAAGCTTGGTGTTGAATTGGATTTGAGGGATAAGCCTGTGGG 612
Query 592 ACTTGGAGTTAGGTCAAGAAGATATGCGATATTGGCTGATGATGGTGTTGTGAAAGTTCT 651
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 613 ACTTGGAGTTAGGTCAAGGAGATATGCGATTTTGGCTGATGATGGTGTTGTGAAAGTTCT 672
Query 652 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 732
Query 712 CTGATTCTT-TC-TT--CT--TC--TT-C-TCTGT-TTCGAt-tttt---tttt-ttt-- 753
||||||||| | || || || || | ||| | ||| | |||| |||| |||
Sbjct 733 CTGATTCTTATGATTTTCTCATCAATTTCGTCT-TCTTCTCTGTTTTGAATTTTCTTTAC 791
Query 754 t-tGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCAT-ATCGGATTTGTAATGGAATA 811
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 792 TCTGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCATTATCGGATTTGTAATGGAATA 851
Query 812 ATGAATTTAGAGGT 825
||||| ||||||||
Sbjct 852 ATGAAGTTAGAGGT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5