BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485672
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protei... 920 0.0
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 649 0.0
> AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein | chr3:19645660-19646962
FORWARD LENGTH=1146
Length=1146
Score = 920 bits (498), Expect = 0.0
Identities = 650/720 (90%), Gaps = 23/720 (3%)
Strand=Plus/Plus
Query 354 TCCTGAATTCTCAACTAGTTTCTTCTCTCAAG-AGAAACAAG-GTCTATCGTTGAGAACT 411
||||||||||||||||||||||||||||| || |||||| || || | || || ||||||
Sbjct 408 TCCTGAATTCTCAACTAGTTTCTTCTCTC-AGAAGAAAC-AGAGTTTGTCTTTAAGAACT 465
Query 412 AGTCGAAGATCACTGAGTTTACCGGAGTTTCCTGTAAAAATCTGCCATTACTTCAACAAA 471
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 466 AGTCGAAGATCACTGAGTTTACCAGAGTTTCCTCTCAAAATCTGCCATTACTTCAACAAA 525
Query 472 GGGTTTTGCAAACACGGCAACAACTG-----------T-AGCGATGAAGAGCATGTTGTT 519
|| || |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 526 GGATTCTGCAAACACGGCAACAACTGTCACAACAACCTAAGCGACGAAGAGCATGTTGTT 585
Query 520 TCCGCTGTATCACTTGAGAAGCTAGAAAGAGAGATCATTTACCTGCTTAAATCAAGAAGA 579
||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 586 TCCCCTGGATCACTTGAGAAGCTAGAAAGAGAGATCATTGAGCTGCTTAAATCAAGAAGA 645
Query 580 GGTGCTCCAATTTCCATAGC-TTCTTTGCCAATGATGTACTACGAGAAGTATGGTAGGAC 638
|||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 646 GGTGCTCCAATTTCCATAGCATT-TTTGCCAATGATGTACCACGAGAAGTATGGTAGGAG 704
Query 639 TCTTCAAGCTGAAGGCTATCTCACTGAGTCACAAAGACATGGCAAAGCTGGCTATAGCCT 698
||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 705 TCTTCAAGCTGAAGGATATCTCACAGAGTCACAAAGACATGGCAAAGCTGGTTTTAGCCT 764
Query 699 CACCAAGCTTCTTGTTCGCTTAAAGAACACCATCCGCCTCATCGACAGGCCTCATGGGCA 758
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 CACCAAGCTTCTTGCTCGCTTAAAGAACACCATCCGCCTCATCGACAGGCCTCATGGACA 824
Query 759 ACATTCAGTAATACTAGCAGAAGATGTATTAAAGTTTGTGGAATATACGGGAGAGAAAAG 818
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 825 ACATTCAGTTATACTAGCTGAAGATGTATCAAAGTTTGTGGAATATACGGGAGAGAGAAG 884
Query 819 CGAACACGGAGCGATCCTT-GCTGGCTCGAGACAGATTTACTTAACATTTCCGGCGGAGA 877
|||||| ||||| ||| || ||||| || || ||| ||||||| ||||||||||| ||||
Sbjct 885 CGAACATGGAGCAATC-TTAGCTGGTTCAAGGCAGGTTTACTTGACATTTCCGGCAGAGA 943
Query 878 GTAGTTTCACTGAACATGATGTTTCAAACTATTTCTCCAAAGTTGGACCAGTGGAAGATG 937
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 944 GTAGTTTCACTGAACATGACGTTTCAAACTACTTCTCTGAAGTTGGACCAGTGGAAGATG 1003
Query 938 TGAGGATTCCATGTCAACAAAAGAGAATGTTTGGATTTGTAACTTTTGCTTACACAGAAG 997
| || ||||||||||||||||||||||||| ||||||||||||||||| ||| | |||
Sbjct 1004 TAAGAATTCCATGTCAACAAAAGAGAATGTATGGATTTGTAACTTTTGTTTATATGGAA- 1062
Query 998 AC-GTCAAACACATTCTTGCTAAAGGCAATCCTCATTTCGTATGCGGAGCACGTGTTCTC 1056
|| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1063 ACCGTCAAACGCATTCTTGCTAAAG-CAATCCTCATTTCATATGCGGAGCACGTGTTCTC 1121
Score = 468 bits (253), Expect = 5e-131
Identities = 323/356 (91%), Gaps = 7/356 (2%)
Strand=Plus/Plus
Query 1 ATGAATGATGTGCAAAACAGAATTCACCAACTTGAACCAGAGAATGCATTGAAGATCGTC 60
||||||| |||||| |||||||| || |||||||||||||||||||||| ||||||| |
Sbjct 19 ATGAATGTTGTGCACAACAGAATCCATCAACTTGAACCAGAGAATGCATCGAAGATCATA 78
Query 61 GGTTATCTCTTGTTGATGCAACACCACAACGACCGTGACATGATTCGTCTCGCATTCTGT 120
||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||
Sbjct 79 GGTTATCTCTTGTTGATGCAAGATCAAAACGACCGTGACATGATACGTCTCGCATTCTGT 138
Query 121 CCAGATTCGGTGATGCGTTCCATGATCAACTGTGTTAAATATGAATTGGCTAATAACTCT 180
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 139 CCAGATTCGGTGATGCGTTCTATGATCAACTGTGTTAAATGTGAATTGGCTAAAAACTCT 198
Query 181 CATTGCGA---CATTCCTACTTCTGATCACATTCAAGTCCGTAAATTCGGATCATTCA-C 236
|||| | | ||| ||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct 199 CATTACAATAACATCCCTTCTTCTGATCACATTCAAATCCGTAAATTCGGATCATT-ATC 257
Query 237 CGGTTCATCAAACCAATCCCTTTTGGTGTCTATCTCTCCTCCTTCTGTTCTCTCCATGGG 296
|||||||||||||||||| |||||||| ||| |||||||||||| |||||||| |||||
Sbjct 258 CGGTTCATCAAACCAATCTCTTTTGGTTTCTGCCTCTCCTCCTTCGGTTCTCTCTATGGG 317
Query 297 AACAAGTTTTTGGGAGAATACAAACGACATGGATTCATCATTGCAAA-ACAATGTT 351
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 318 AACAAGTTTTTGGGAGAATACAAACGATATGGATTCATCATTG-AAAGACAATGTT 372
> AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr2:1858543-1861895 REVERSE LENGTH=2436
Length=2436
Score = 649 bits (351), Expect = 0.0
Identities = 502/574 (87%), Gaps = 14/574 (2%)
Strand=Plus/Plus
Query 489 CAACAA-CTGTAGCGATGAAGAGCATGTTGTTTCCGCTGTATCACTTGAGAAGCTAGAAA 547
|||||| || || || |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 948 CAACAACCT-AAGTGACGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAG 1006
Query 548 GAGAGATCATTTACCTGCTTAAATCAAGAAGAGGTGCTCCAATTTCCATAGCTTCTTTGC 607
| ||||||||| | | || || | ||||||||| |||||||| ||||||||||| ||||
Sbjct 1007 GTGAGATCATTGAGTTACTCAAGTTAAGAAGAGGAGCTCCAATCTCCATAGCTTCATTGC 1066
Query 608 CAATGATGTACTACGAGAAGTATGGTAGGACTCTTCAAGCTGAAGGCTATCTCACTGAGT 667
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 1067 CAATGATGTACTACGAAAAATACGGTAGGACTCTTCAAGCTGAAGGATATCTCACTGAGT 1126
Query 668 CACAAAGACATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGTTCGCTTAAAGAACA 727
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 1127 CACAAAGACATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACA 1186
Query 728 CCATCCGCCTCATCGACAGGCCTCATGGGCAACATTCAGTAATACTAGCAGAAGATGTAT 787
| || |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| ||
Sbjct 1187 CGATTCGCCTCGTCGACAGGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCAT 1246
Query 788 TAAAGTTTGTGGAATATACGGGAGAGA-AAAGCGAACACGGAGCGATCCTTGCTGGCTCG 846
||||||||||||||| || ||||||| ||| ||||| ||||| ||||||||||| ||
Sbjct 1247 CAAAGTTTGTGGAATACACTGGAGAGAGAAAT-GAACATGGAGCAATCCTTGCTGGTTCT 1305
Query 847 AGACAGATTTACTTAACATTTCCGGCGGAGAGTAGTTTCACTGAACATGATGTTTCAAAC 906
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1306 AGACAGATTTACTTAACGTTTCCGGCAGAGAGTAGTTTCACTGAACATGATGTCTCAATC 1365
Query 907 TATTTCTCCAAAGT-TGGACCA-GTGGAAGATGTGAGGATTCCATGTCAACA-AAAGAGA 963
|| ||| || | | ||||| | |||||||||||||||||||| || || || ||| |||
Sbjct 1366 TACTTCACCTCA-TATGGAC-ATGTGGAAGATGTGAGGATTCCTTGCCAGCAGAAA-AGA 1422
Query 964 ATGTTTGGATTTGTAACTTTTGCTTACACAGAAGAC-GTCAAACACATTCTTGCTAAAGG 1022
|||| |||||||||||| ||||||| | ||||| || || ||||||||||||||||||||
Sbjct 1423 ATGTATGGATTTGTAACATTTGCTTCCTCAGAA-ACAGTTAAACACATTCTTGCTAAAGG 1481
Query 1023 CAATCCTCATTTCGTATGCGGA-GCACGTGTTCT 1055
||||||||||||| | ||| | |||||||||||
Sbjct 1482 CAATCCTCATTTCATTTGCA-ATGCACGTGTTCT 1514
Score = 154 bits (83), Expect = 2e-36
Identities = 127/148 (86%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 355 CCTGAATTCTC-AACTAGTTTCTTCTCTCAAGAGA-AACAAGGTCTATCGTTGAGAACTA 412
||||||||||| ||| | |||||||||||||| | ||| || | | ||| ||||||
Sbjct 742 CCTGAATTCTCTAAC-GGGTTCTTCTCTCAAGA-ACGTCAATGTTTGCCTTTGCGAACTA 799
Query 413 GTCGAAGATCACTGAGTTTACCGGAGTTTCCTGTAAAAATCTGCCATTACTTCAACAAAG 472
| |||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 800 GCCGAAGATCCCCGAGTTTACCCGAGTTCCCGGTAAAAATCTGCCATTACTTCAACAAAG 859
Query 473 GGTTTTGCAAACACGGCAACAACTGTAG 500
|||| |||||||||||||||||||||||
Sbjct 860 GGTTCTGCAAACACGGCAACAACTGTAG 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5