BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485676
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53010.1 | Symbols: | Domain of unknown function (DUF303) ... 1334 0.0
> AT3G53010.1 | Symbols: | Domain of unknown function (DUF303)
| chr3:19656488-19658003 REVERSE LENGTH=1084
Length=1084
Score = 1334 bits (722), Expect = 0.0
Identities = 889/970 (92%), Gaps = 10/970 (1%)
Strand=Plus/Plus
Query 1 ATTATTCTGTCTTGCTTCTCACTTCGACTCTGATTTGGATCTCAATCTCAATCTTCAAGC 60
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATTCTGTCTTGCATCTTACTTCGACTCTGATTTGGATCTCAATCTCAATCTTCAAGT 60
Query 61 TTA--C-TCGAAACAATGACCAAGATCTTCTACTACTTCTTTATCATCAATTTTCTTCAA 117
||| | || |||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 61 TTACTCATCAAAACAATGACAAAGATCTTCTACTACTTCTTCATCATCATTTTTCTTCAA 120
Query 118 TCTTCACCACAAATCCAATCCCAAACCATTC-CAAGAAACATTAGCATTTTCATCTTGGC 176
||| |||| || | ||||||||||||| || |||| ||||| |||||||||||||||||
Sbjct 121 TCTCCACCGCATCTTCAATCCCAAACCA-TCACAAGGAACATCAGCATTTTCATCTTGGC 179
Query 177 GGGGCAAAGCAACATGGCGGGTCGAGGCGGAGTTTATAACGACACCGCCACAAACACCAC 236
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 CGGGCAAAGCAACATGGCGGGTCGAGGCGGTGTTTATAACGACACTGCCACAAACACCAC 239
Query 237 CGTGTGGGACGGCGTAATTCCGCCGGAATGTCGATCAAACCCTTCGATCCTCCGTCTCAC 296
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 240 CGTGTGGGACGGTGTAATTCCGCCAGAATGCCGATCAAACCCTTCGATCCTCCGTCTCAC 299
Query 297 G-GCCAAACTCGAGTGGAAAGAGGCTAAAGAGCCACTACACGTTGACATTGATGTTAACA 355
| | |||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 300 GAG-TAAACTCGAGTGGAAAGAGGCTAAAGAGCCACTTCACGTTGACATTGACATTAATA 358
Query 356 AAACCAATGGTATTGGACCAGGAATGTCATTTGCAAACCGAGTGATTACCCGGTTTGGTC 415
| || |||||| ||||||| || ||| | ||||| ||||| ||| ||| |||||||||||
Sbjct 359 AGACTAATGGTGTTGGACCGGGGATGCCCTTTGCTAACCGGGTGGTTAACCGGTTTGGTC 418
Query 416 AGGTGGGTTTGGTTCCGTGCTCTATCGGTGGGACTAAACTAAGCCAATGGCAAAAAGGTC 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGTGGGTTTGGTTCCGTGCTCTATCGGTGGGACTAAACTAAGCCAATGGCAAAAAGGTG 478
Query 476 AGTTTCTTTACGAGGAAACGGTTCGGAGGTCCAAAGCGGCGGTGGCTAGTGGTGGTGG-- 533
|||||||||||||||| ||||| |||| | ||||||||| ||||||||||||||||
Sbjct 479 AGTTTCTTTACGAGGAGACGGTGAAGAGGGCTAAAGCGGCGATGGCTAGTGGTGGTGGTG 538
Query 534 -CTCGTACCAGGCGGTTTTATGGTATCAGGGTGAGTCGGATACGGTTGATATGGTTGATG 592
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 539 GCTCGTACCGGGCGGTTTTGTGGTATCAGGGTGAGTCTGATACGGTTGATATGGTCGATG 598
Query 593 CTTCAGTTTATAAGAAGAGACTAGTCAAGTTTTTCAATGATCTTCGAAATGATTTACATG 652
|||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 599 CTTCGGTATATAAGAAGAGACTAGTGAAGTTTTTCAGTGATCTTCGAAATGATTTACAAC 658
Query 653 AGCCAAATCTTCCTATTATCCAGGTGGCTCTAGCGACAGGTGCAGGACCATATCTTGACG 712
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 ACCCAAATCTTCCTATTATCCAGGTGGCTCTAGCGACAGGAGCAGGACCATATCTTGACG 718
Query 713 CGGTGAGAAAAGCTCAATTGAAGACAGATCTTGAGAACGTGTATTGTGTTGATGCCAGAG 772
||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 719 CGGTGAGAAAAGCTCAACTGAAGACTGATCTTGAGAACGTGTATTGCGTTGACGCCAGAG 778
Query 773 GCCTACCACTTGAACCGGATGGTTTGCATCTGACCACTTCATCTCAGGTCCGGCTCGGTC 832
||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 779 GCCTACCTCTTGAACCGGACGGTTTGCATCTGACCACTTCCTCTCAGGTCCAGCTCGGTC 838
Query 833 ACATGATAGCTGAGAGTTTCTTGGCCATTCCCAATTCAGCTCAACCATCGCTCTACATGC 892
|||||||||| |||||||||||||| ||||| |||||||||| |||||| ||||||||||
Sbjct 839 ACATGATAGCCGAGAGTTTCTTGGCTATTCCAAATTCAGCTCGACCATCACTCTACATGC 898
Query 893 ATTTTTCCTCCTTGTTCTGTTCCCTCTATGTTTCTTTAAATATTTTTGGAACTATCTTTC 952
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 ATTTTTTCTCCTTGTTCTGTTCCCTTTATGTTTCTTTAAATATTTTTGGAACTATCTTTC 958
Query 953 ATTTTCTTTA 962
||||||||||
Sbjct 959 ATTTTCTTTA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5