BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485677
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein ... 1103 0.0
AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15... 481 5e-135
> AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein
L24e family protein | chr3:19660517-19662025 REVERSE LENGTH=837
Length=837
Score = 1103 bits (597), Expect = 0.0
Identities = 662/693 (96%), Gaps = 5/693 (1%)
Strand=Plus/Plus
Query 4 GAGCTTTGTCGTTTCAGTGGCCAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 129 GAGCTTTGTCGTTTCAGTGGACAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 188
Query 64 TCTGATTCTCAGGTTTTCTTGTTTGCT-AACTCAAAGTGTAAGAGGTACTTCCATAACAA 122
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 189 TCTGATTCTCAGGTTTTCTTGTTT-CTTAACTCAAAATGTAAGAGGTACTTCCATAACAA 247
Query 123 GTTGAAGCCATCCAAGCTTACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATGC 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATGC 307
Query 183 AGCGCAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCAT 242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCAT 367
Query 243 TGTTGGTGCTACCTTGGAGGTGATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGA 302
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGA 427
Query 303 TGCTGCCAGAGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATTAAAAAGACCAAAGATGA 362
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 428 TGCAGCCAGGGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGA 487
Query 363 AAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTGAAGGCTAATTTCCC 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 488 AAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCC 547
Query 423 CAAAGCTGCTGCTGCATCCAAGGGTCCTAAGTTGGGAGGTGGTGGTGGCAAACGCTGAAG 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 548 CAAAGCTGCTGCTGCATCCAAGGGTCCTAAGGTGGGAGGTGGTGGTGGCAAACGCTGAAG 607
Query 483 AGCTTAA-GCCATATTTTCTCACTTTGTGTCTTTCTCTGCTAGTGGCTACTTTTACTAGT 541
||||||| ||||| |||||||||| || |||||| ||||||||| |||||||||| ||||
Sbjct 608 AGCTTAAAGCCATCTTTTCTCACTCTGCGTCTTT-TCTGCTAGTAGCTACTTTTAGTAGT 666
Query 542 TAATGTTGATTTCTGAATATTCTGCAAAACGTAAACCTTGTTATTTCGCTTTTGTCTCTT 601
| ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 667 TGATGTTCATTTCTGAATATT-TGCAAAACATAAACCTTGTTATTTCGTTTTTGTCTCTC 725
Query 602 ACTTTTGCTACTCTTATAATATCAGACTTGAGAATTTTGCTGCTTATGAACTTCATTTCG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 726 ACTTTTGCTACTCTTATAATATCAGACTTGAGAATTTTGCTGCTTATGAACTTTATTTCA 785
Query 662 CTGCTCTCTCTTTTCCTCTTATTATTAAAATCA 694
|||||||||||| ||||| ||| ||||||||||
Sbjct 786 CTGCTCTCTCTTGTCCTCCTATCATTAAAATCA 818
> AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15350347-15351900
REVERSE LENGTH=777
Length=777
Score = 481 bits (260), Expect = 5e-135
Identities = 415/488 (85%), Gaps = 17/488 (3%)
Strand=Plus/Plus
Query 4 GAGCTTTGTCGTTTCAGTGGCCAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 63
|||||||| || |||||||||||||| |||||||| || ||||| || || |||||||||
Sbjct 97 GAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATCCGA 156
Query 64 TCTGATTCTCAGGT-TTTCTTGTTTGCT-AACT-CAAAGTGTAAGAGGTACTTCCATAAC 120
|| || |||||||| ||| |||||| || |||| |||| ||||||||||| ||||| |||
Sbjct 157 TCGGACTCTCAGGTGTTT-TTGTTT-CTCAACTCCAAA-TGTAAGAGGTATTTCCACAAC 213
Query 121 AAGTTGAAGCCATCCAAGC-TTACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGA 179
|||||||||||||| |||| || | |||||||| |||||| ||||||| |||||||||||
Sbjct 214 AAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGGA 272
Query 180 TGCAGCGCAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTC 239
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 273 CGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGTC 332
Query 240 CATTGTTGGTGCTACCTTGGAGGTGATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCG 299
||||| |||||||| |||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 333 GATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTCG 392
Query 300 TGATGCTGCCAGAGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATTAAAAAGACCAAAGA 359
|||||| || ||||||||||| || |||||||||||||| ||||| || |||||||| ||
Sbjct 393 TGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGGA 452
Query 360 TGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAG------GTGAAGGC 413
|| |||||||| |||||||| || | ||| || |||||||||||| |||||||
Sbjct 453 CGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGG 512
Query 414 TAATTTCCCCAAAGCTGCTGCTGCATCCAAGGGTCCTAAGTTGGGAGGTGGTGGTGGCAA 473
||| ||||||| | | ||||||| |||||| | ||||| |||| |||||||| ||||
Sbjct 513 AAATATCCCCAA-GA-G-TGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAG 569
Query 474 ACGCTGAA 481
||| ||||
Sbjct 570 ACGTTGAA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5