BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485678
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53030.1 | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | ... 2793 0.0
AT5G22840.1 | Symbols: | Protein kinase superfamily protein | ... 303 3e-81
> AT3G53030.1 | Symbols: SRPK4 | ser/arg-rich protein kinase 4
| chr3:19662281-19664505 FORWARD LENGTH=1864
Length=1864
Score = 2793 bits (1512), Expect = 0.0
Identities = 1762/1879 (94%), Gaps = 31/1879 (2%)
Strand=Plus/Plus
Query 1 TCTCTGCACAAGCTTCCAGAAAAATCAAATCAAATCAAAagagagagagagagagaTCCA 60
||||||||||||||||||| ||| |||||||||| | | | |||||||||||||||
Sbjct 1 TCTCTGCACAAGCTTCCAG--AAA--AAATCAAATC---A-A-A-AGAGAGAGAGATCCA 50
Query 61 -AGAAATTGGGTTCAATCGTCGCCGGATATTCCAAGAGTTGAGAGTTTAGTTTGTCTCCC 119
| ||||||| || ||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 51 CA-AAATTGGATTGAATCGTCGCCGGATATTCCAAGAGTAGAGAGCTTAGTTTGTCTCGC 109
Query 120 GTTGCGTCTAGATTTAGTGAATATGGAGGTGGAGAAGTGGAACAGCGACGGCGGTGAATA 179
|||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 110 GTTGCGTCTAGATTTACTGAATATGGAGGCGGAGAAGTGGAACAGCGACGGTGGTGAATA 169
Query 180 CACGTCGGAGGACGAAGGTACGGAGGATTACCGGCGCGGCGGTTACCACTCCGTTCGGAT 239
||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||
Sbjct 170 CACGTCGGAGGACGAAGGTACAGAAGATTACCGACGCGGCGGTTACCACGCCGTTCGGAT 229
Query 240 CGGTGACTCATTCAAAAACGGCCGGTATGTTGTTCAGAGCAAACTCGGTTGGGGTCATTT 299
||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 230 CGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTT 289
Query 300 CTCTACTGTTTGGCTCGCGTGGGATACTCAATCCTCTAGATATGTGGCTTTAAAGGTGCA 359
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 290 CTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTAGATATGTGGCTTTGAAGGTGCA 349
Query 360 AAAGAGTGCTCAGCATTATACTGAAGCTGCCATGGATGAGATAACTATATTGCAACAGAT 419
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 350 AAAGAGTGCTCAGCATTATACTGAAGCAGCCATGGATGAGATAACAATATTGCAACAGAT 409
Query 420 TGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTTTTGGATCATTTTAAACA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 410 TGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTTTTGGATCATTTCAAACA 469
Query 480 CTCAGGTCCGAATGGGCAGCATGTATGTATGGTTTTTGAGTATTTGGGAGATAATCTGTT 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTCAGGTCCGAATGGTCAGCATGTATGTATGGTTTTTGAGTATTTGGGAGATAATCTGTT 529
Query 540 AACGCTGATTAAGTATTCTGATTACCGTGGCTTGCCTATTCCGATGGTTAAGGAGATTTG 599
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 530 AACGTTGATTAAGTATTCTGATTACCGTGGCTTACCTATTCCTATGGTTAAGGAGATTTG 589
Query 600 TTATCATATGTTGGTTGGGTTAGACTACTTGCATAAACAGCTCTCGATTATACATACTGA 659
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 590 TTATCATATGTTGGTTGGTTTAGACTACTTGCATAAACAGCTTTCGATTATACATACTGA 649
Query 660 TCTGAAGCCTGAGAATGTTTTGTTACCGTCAACGATTGATCCATCTAAAGATCCGAGGAA 719
| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 650 TTTGAAGCCTGAGAATGTTTTGTTACCGTCAACTATTGATCCGTCTAAAGATCCGAGGAA 709
Query 720 GTCTGGAGCTCCTCTTGTTCTCCCCACTGATAAGGATAAGACAGTTGTTGACTCCAATGG 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 GTCTGGAGCTCCTCTTGTTCTCCCCACTGATAAGGATAATACAGTTGTTGACTCCAATGG 769
Query 780 GGATTTTGTCAAGAATCAAAAGACAGGTAGTCATAGAAAGGCAAATATTTCGGCTCATGG 839
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||
Sbjct 770 TGATTTTGTCAAGAATCAAAAAACAGGAAGTCATAGAAAGGCAAAGCTTTCGGCTCAGGG 829
Query 840 AAATGCAGAGAGTAAGGGCAATACTGAATCTGACAAAGTTCGTGGAGTGGGATCACCGGT 899
| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 830 ACATGCAGAGAATAAGGGCAATACGGAATCTGATAAAGTTCGTGGAGTGGGATCACCGGT 889
Query 900 TAATGGAAAACCAA-GAGCTGCAGAAAAATCGGTTGAAGAAGATTGTCCTTCTACTTCTG 958
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TAATGGAAAA-CAATGTGCTGCAGAAAAATCGGTTGAAGAAGATTGTCCTTCTACTTCTG 948
Query 959 ACACAAATGGACTAGATGGCAGCGAGAAAGGAAAGCAAGGTGGTAAGAAAGGGAGTCGAT 1018
|| ||| || | ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 949 ACGCAATTGAATTAGATGGTAGCGAGAAAGGAAAGCAGGGTGGTAAGAAAGGGAGTCGAT 1008
Query 1019 CAAGTAGAAGGCACCTTGTGGCATCTGCTGACCTCAAGTGTAAACTGGTTGACTTTGGTA 1078
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1009 CAAGTCGAAGGCACCTTGTGGCATCTGCTGACCTCAAGTGTAAACTTGTTGACTTTGGTA 1068
Query 1079 ACGCGTGTTGGACATACAAACAGTTCACAAGCGACATTCAAACGAGACAGTATAGGTGCC 1138
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1069 ATGCGTGTTGGACATACAAACAGTTCACAAGCGACATTCAAACGAGACAGTATAGGTGTC 1128
Query 1139 CAGAAGTAATCCTTGGATCTAAATACTCTACATCAGCAGATCTCTGGTCATTTGCGTGCA 1198
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1129 CAGAAGTAATCCTTGGATCTAAATACTCTACATCTGCAGATCTCTGGTCATTCGCGTGCA 1188
Query 1199 TATGTTTTGAACTTGCCACTGGAGATGTACTGTTCGATCCCCATAGTGGAGACAATTATG 1258
||||||||||||||| |||||||||||| || || |||||||||||||| ||||||||||
Sbjct 1189 TATGTTTTGAACTTGTCACTGGAGATGTGCTATTTGATCCCCATAGTGGCGACAATTATG 1248
Query 1259 ATAGAGATGAGGACCACTTGGCTCTGATGATGGAGCTTCTTGGGATGATGCCACGCAAGA 1318
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATAGAGATGAGGATCACTTGGCTCTGATGATGGAGCTTCTTGGGATGATGCCACGCAAGA 1308
Query 1319 TAGCATTGGGAGGCCGCTACTCCAGAGATTTCTTTAACAGGCATGGTGATCTTCGACACA 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TAGCATTGGGTGGCCGCTACTCCAGAGATTTCTTTAACAGGCATGGTGATCTTCGACACA 1368
Query 1379 TCAGAAGACTGCGTTTCTGGCCCATGAACAAAGTCCTGACCGAGAAGTACGAGTTCAGTG 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1369 TCAGAAGACTGCGTTTCTGGCCCATGAACAAAGTGCTGACCGAGAAGTACGAGTTCAGTG 1428
Query 1439 AGCAAGATGCAAATGACTTGAGTGATTTTCTTGTTTCGATTCTTGATTTTGTCCCCGAGA 1498
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1429 AGCAAGATGCAAATGACCTGAGTGATTTTCTTGTTTCGATTCTTGATTTCGTCCCAGAGA 1488
Query 1499 AACGACCAACTGCAGCTCAGTGTCTGTTACATCCCTGGATCAACTCTAGTTCCCGCTCTA 1558
|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 1489 AACGACCAACTGCAGCTCAGTGTCTGTTACATCCTTGGATCAACTCTGGTCCCCGCTCTA 1548
Query 1559 TAAAACCTTCACTCTCACCTAAAGACCAAAATTCCGAAGACAAGCTTGATACAGAGGAA- 1617
|||||||||| || | | || ||| ||||||| | || ||||| ||||||||| ||
Sbjct 1549 TAAAACCTTCGCT-T-A---AA-GACGAAAATTC--A-GATAAGCTCGATACAGAG-AAG 1598
Query 1618 AAGAAGAGGGAGAATGAGGAGCAAGAAGCTGTGGAAGTTAAAATGGGGAACGTTGTCATA 1677
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1599 AACAAGAGGGAGAATGAGGAGCAAGAAGCTGTGGAAGTTAAAATGGGAAACGTTGTTATA 1658
Query 1678 TCATCCTCAGACTCTAAACCAGGTATGAGCCAAAGCTCC---ACTCTTAAGCAAGCGATT 1734
||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 1659 TCATCCTTAGACTCTAAACCAGGTATGAGCCAAAGCTCCTCCACTCTTAAGCTAGCAATT 1718
Query 1735 -GACTTCTGAGATTTGTCTGTTCGATATCTGAGCTCTGTGAACCACTCAAGCTGTTTAAT 1793
|||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1719 TGACTCCTGAGATATGTCTGTTCGATATCTGAGATCTGTGTACCACTCAAGCTGTTTAAT 1778
Query 1794 AGAAAGAACAATTTCATATATGCAGAGTGGTATCTTGTTTGTGTACTTCTACGTATCCAA 1853
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1779 AGAAAGAACATTTTCATATACGCAGAGTGGTATCTTGTTTGTGTACTTCTACGAATCCAA 1838
Query 1854 ATACCAAT-ATTCACATTT 1871
||||||| ||||||||||
Sbjct 1839 -TACCAATTATTCACATTT 1856
> AT5G22840.1 | Symbols: | Protein kinase superfamily protein
| chr5:7630717-7633223 REVERSE LENGTH=2123
Length=2123
Score = 303 bits (164), Expect = 3e-81
Identities = 401/514 (78%), Gaps = 22/514 (4%)
Strand=Plus/Plus
Query 173 GTGAATACACGTCGGAGGACGAAGGTACGGAGGATTACCGGCGCGGCGGTTACCACT-CC 231
|||| ||| | || ||||||||||| || || |||||| | | || |||||||| | |
Sbjct 161 GTGACTACTCATCAGAGGACGAAGGAACAGAAGATTACAGAAGAGGAGGTTACCA-TACG 219
Query 232 GTTCGGA-TCGGTGACT-CATTCAAAAACGG-CCGGTATGTTGTTCAGAGCAAACTCGGT 288
|||| || ||||||| | | || || || || | ||||| |||| || || || |||
Sbjct 220 GTTC-GAGTCGGTGA-TACTTTTAAGAATGGATC-TTATGTCATTCAAAGTAAGCTTGGT 276
Query 289 TGGGGTCATTTCTCTACTGTTTGGCTCGCGTGGGATA--CTCAATCCTCTAGATATGTGG 346
||||| |||||||| ||||| |||||||| ||||| | ||||| |||| |||| || |
Sbjct 277 TGGGGACATTTCTCCACTGTCTGGCTCGCTTGGGACACTCTCAA--CTCTCGATACGTAG 334
Query 347 CTTT-AAAGGTGCAAAAGAGTGCTCAGCATTATACTGAAGCTGCCATGGATGAGATAACT 405
|||| ||| | || |||||||||||||| || |||||||| ||||||||||||||||
Sbjct 335 CTTTGAAA-ATCCAGAAGAGTGCTCAGCACTACACTGAAGCGGCCATGGATGAGATAAAG 393
Query 406 ATATTGCAACAGATTGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTT-TT 464
|||||| ||||||||||||| || || | || |||| || ||||||||||||||| ||
Sbjct 394 ATATTGAAACAGATTGCAGAAGGCGATGCGGAAGATAAGAAGTGTGTTGTGAAGCTTCTT 453
Query 465 GGATCATTTTAAACACT-CAGGTCCGAATGGGCAGCATGTATGTATGGTTTTTGAGTATT 523
|||||||| || || | | ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 454 -GATCATTTCAAGCA-TGCTGGTCCTAATGGGCAACATGTTTGTATGGTTTTTGAGTATT 511
Query 524 TGGGAGATAATCTGTTAACGCTGATTAAGTATTCTGATTACCGTGGC-TTGCCTATTCCG 582
|||||||||| || || || | || ||||| ||||||||| || || ||| |||
Sbjct 512 TGGGAGATAACCTCTTGTCGGTTATCAAGTACAGTGATTACCGAGGGGTT-CCTCTTCAT 570
Query 583 ATGGTTAAGGAGATTTGTTATCATATGTTGGTTGGGTTAGACTA-CTTGCATAAACAGCT 641
|||||||| ||||| |||| |||||| || ||||| || || || ||| ||| | ||
Sbjct 571 ATGGTTAAAGAGATCTGTTTTCATATCTTAGTTGGTTTGGATTATCTT-CATCGTGAACT 629
Query 642 CTCGATTATACATACTGATCTGAAGCCTGAGAAT 675
|| ||||| ||||||||| | ||||| ||||||
Sbjct 630 TTCTATTATTCATACTGATATCAAGCCGGAGAAT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92620005525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5