BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485679
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53040.1 | Symbols: | late embryogenesis abundant protein, ... 1995 0.0
> AT3G53040.1 | Symbols: | late embryogenesis abundant protein,
putative / LEA protein, putative | chr3:19664674-19666487
REVERSE LENGTH=1645
Length=1645
Score = 1995 bits (1080), Expect = 0.0
Identities = 1427/1588 (90%), Gaps = 50/1588 (3%)
Strand=Plus/Plus
Query 21 CTTGGATTCCAAGCAAACAAGAAACAAATCATGGCATCAGGACAACGGGAGGCAGAGAGG 80
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 CTTGGAAGCCAAGCAAACAAGAAACAAATCATGGCATCAGGACAACGGGAGGCAGAGAGG 112
Query 81 TCCGCGAAGGCCGAGAGAGCTGAGGCTGTGGCGAGTCTAGCGGCTGAAGATTTGAAAGAT 140
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 113 TCCGCCAAGGCCGAGAGAGCTGAGGCTGCAGCGAGTCTAGCGGCTGAAGATTTGAAAGAT 172
Query 141 ATCAACAAAGGTGACGTGACGTACAAGGTGACGGAGAGGACAACAACTACCGAGCCAGAG 200
|||||||||||||| ||||||||||| | |||||||||||||| || |||||||| |||
Sbjct 173 ATCAACAAAGGTGATGTGACGTACAAATTAACGGAGAGGACAACGACGACCGAGCCTGAG 232
Query 201 AGACCCGGGCTGATTGGTTCAGTGATGAAGGCGGTGCAAGGAACTAAAGAAGCAGTGATA 260
|| || || ||||| || || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 233 AGGCCTGGCCTGATAGGCTCGGTGATGAAGGCGGTGCAAGGAACTAAAGACGCAGTCATC 292
Query 261 GGTAAAAGCCATGATGCGGCTGAGTCAACGAGAGAGGGAGCCGAAATTGCATCAGAGAAG 320
|||||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 293 GGTAAAAGTCATGATACGGCTGAGTCAACGAGGGAGGGAGCCGATATTGCATCGGAGAAG 352
Query 321 GCAGCGGGGATGAGAGACGCCACAGGAGAGGTTAGAGACAGTACTGCGCAGAAGACTAAG 380
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 353 GCAGCGGGGATGAGAGACACCACCGGAGAGGTTAGAGACAGTACTGCGCAGAAGACTAAG 412
Query 381 GAAACTGCAGATTACACGGCCGATAAGGCGAGAGAAGCTAAAGATAAAACTGCGGAAAAG 440
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 413 GAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAAGATAAGACTGCGGACAAG 472
Query 441 ACGAAGGAAACCGCAGAATACATGGCGGAGAAGGCAAGAGAAGCTCAAGATAAAACGGCG 500
|| |||||||||||||| ||| ||| |||||||||||||||||| |||||| ||||||
Sbjct 473 ACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGCAAGAGAAGCTAAAGATAGAACGGCA 532
Query 501 GATAAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAA 560
|| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 533 GACAAGACTAAGGAAACGGCAGAATACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAA 592
Query 561 ACGGCGGATAAGACGAAG-GAA-ACCGCAGAATACACGGCAGAGAAGGCAAAGGAAGCCA 618
|||||||||||| | | ||| | ||| ||||||||||||||||||||||||||||
Sbjct 593 ACGGCGGATAAGTTG-GGTGAATA-TAAAGATTACACGGCAGAGAAGGCAAAGGAAGCCA 650
Query 619 AAGACACGACGGCCGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGATAAGGCAAAAG 678
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 651 AAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGATAAGGCGAAAG 710
Query 679 AAGCTAAGGATAAGGCGGCAGAGAAAGCAAAGGAAACTGCGGAATATA-CTGCGGATAAG 737
|||||||||||||| |||||||||||||||||||||| |||||||| | || ||||||||
Sbjct 711 AAGCTAAGGATAAGACGGCAGAGAAAGCAAAGGAAACCGCGGAATACACCT-CGGATAAG 769
Query 738 GCAAGGGAAGCAAAAGACACGACGGCGGAG-AAGCTGGGTGAGTACAAAGACTACACGGT 796
|| |||||| ||||||| | ||| || ||| ||| |||| || || |||||||||||||
Sbjct 770 GCGAGGGAAACAAAAGATAAGACAGCTGAGAAAG-TGGGCGAATATAAAGACTACACGGC 828
Query 797 GGAGAAAGCAAATGAAACTGCGGAGAAGGCGAGGGAAGCGAAAGATAAGACAGCTGAGAA 856
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 829 GGAGAAAGCAAAGGAAACTGCGGATAAGGCGAGGGAAGCAAAAGATAAGACAGCTGAGAA 888
Query 857 AGTGGGCGAATATAAAGACTACACGGCAGAGAAGGCGACAGAAGGGAAAGATGCAGGAGT 916
|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 889 AGTGGGAGAATATAGAGACTACACGGCAGAGAAGGCGACAGAAACGAAAGATGCAGGTGT 948
Query 917 GAGTAGGCTTGGTGAACTGAAGGATAGTGCAGTGGACACAGCTAAAAGAGCTATGGGTTT 976
||||| | | || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 949 GAGTAAGATCGGAGAACTGAAGGATAGTGCAGTGGACACTGCTAAAAGAGCTATGGGTTT 1008
Query 977 CTTGTCGGGCAAGACAGAAGAAACCAAACAAAAAGCCGTTGAGACCAAAGACACGGCCAA 1036
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CTTGTCGGGCAAGACAGAGGAAACCAAACAAAAAGCCGTTGAGACCAAAGACACGGCCAA 1068
Query 1037 GGAGAAGATGGACGAGGCGGGAGAAGAAGCGAGGCGGAAGATGGAAGAGATGAGACTTGA 1096
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1069 GGAAAAGATGGACGAGGCGGGAGAAGAAGCAAGGCGGAAGATGGAAGAGATGAGACTTGA 1128
Query 1097 GGGCAAAGAACTTGAAGAGGATGCTTCTAAAAAGACGCAACAGAGCACCGAATCAGCTGC 1156
||||||| ||||||| ||||||||||||| |||||| |||||||| |||||||| |||||
Sbjct 1129 GGGCAAAAAACTTGACGAGGATGCTTCTAGAAAGACACAACAGAGTACCGAATCTGCTGC 1188
Query 1157 TGACAGAGCCCAAGAGACTAAGGATTCCGTAGCCCAAAGAGGTGAAGAAGGGAAGGGAAG 1216
||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TGACAAAGCTCACGAGACTAAAGATTCCGTAGCCCAAAGAGGTGAAGAAGGGAAGGGAAG 1248
Query 1217 TATAATGGGTGCGTTGGGGAACATGACCGGAGCTATAAAGAGCAAGCTGACTGGTACTAC 1276
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1249 TATAATGGGTGCGTTGGGGAACATGACTGGAGCTATAAAGAGCAAGCTGACTGGTGCTAC 1308
Query 1277 GACGCCGTCTGACGAGGAGACAAGCGCCG-CGGCC-AGTGGAGGCGAGAGCACGGGGAAG 1334
|||||| ||||| |||||||| |||| | ||||| | ||||| ||||||||| ||||||
Sbjct 1309 GACGCCCTCTGATGAGGAGACGCGCGC-GTCGGCCCA-TGGAGACGAGAGCACAGGGAAG 1366
Query 1335 ACAATTGTGGCGGTTGACGTGAAAGATACTAGGCCTGGATACATCGCGACGGTACTGAAA 1394
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1367 ACAGTTGTGGCGGTTGACGTGAAAGATACTAGGCCTGGATACGTGGCGACGGTACTGAAA 1426
Query 1395 GCGGCGGATCAGATGACCGGTCAAACTTTCAACGACGTTGGAGAGATCGATGA--AG-AG 1451
| |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1427 GAGGCGGATCAGATGACCGGTCAAACTTTCAATGACGTTGGAGAGATCGATGACGAGGAG 1486
Query 1452 AA-G-------C-T-GTG--ATA-AAA----T-TA-TAAC-T-A----TA--CGTTTTGT 1484
|| | | | ||| | | ||| | || ||| | | || ||||||||
Sbjct 1487 AAAGTGAGAATCGTCGTGGGAGAGAAAAAGCTGTAGTAAAATTAGAACTATACGTTTTGT 1546
Query 1485 GGTTTTCTGTAAAACGACGATAACTAGTTTTTA-TTT-TCTCTGTTATGT-----CTTT- 1536
||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||||
Sbjct 1547 GGTTTTCTGTAAAACGATGATAACAAGTTTTTCGTTTCTCTCTGTTATGTTATGTCTTTG 1606
Query 1537 TTCGATCTTGACTTGTAATAAAACTACT 1564
||| ||||||||||||||||||||||||
Sbjct 1607 TTCAATCTTGACTTGTAATAAAACTACT 1634
Score = 289 bits (156), Expect = 7e-77
Identities = 368/466 (79%), Gaps = 31/466 (7%)
Strand=Plus/Plus
Query 429 ACTGCGGAAAAGACGAAGGAAACCGCAGAATACATGGCGGAGAAGGCAAGAGAAGCTCAA 488
|||||| | ||||| |||||||| ||||| |||| ||| || ||||||||||||||| ||
Sbjct 395 ACTGCGCAGAAGACTAAGGAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAA 454
Query 489 GATAAAACGGCGGATAAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAA 548
||||| || ||||| ||||| ||||||||||||| |||| |||| |||||||||||||||
Sbjct 455 GATAAGACTGCGGACAAGACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGCAAGAGAA 514
Query 549 GCTAAAGATAAAACGGCGGATAAGACGAAGGAAACCGCAGAATACACGGCAGAGAAGGCA 608
|||||||||| |||||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 515 GCTAAAGATAGAACGGCAGACAAGACTAAGGAAACGGCAGAATACACGGCGGAGAAGGC- 573
Query 609 AAG-GAAGCCAAAGACACGACGGCCGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGA 667
||| ||||| ||||| | ||||| || ||| ||||||| || ||||| ||||||| ||
Sbjct 574 AAGAGAAGCTAAAGATAAAACGGCGGATAAGTTGGGTGAATATAAAGATTACACGGCAGA 633
Query 668 TAAGGCAAAAGAAGCTAAGGATAAGGCGGCAGAGAAAGCAAAGGAAACTGC--GGAATAT 725
|||||||| ||||| || || | | |||| ||| |||| || | | | || ||
Sbjct 634 GAAGGCAAAGGAAGCCAAAGACACGACGGCGGAG-AAGC-TGGGTGAGTACAAAGACTAC 691
Query 726 ACTGCGGATAAGGC-AAGGGAAGCAAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAA 784
|| | ||||||||| || ||||| || || | |||||| ||||| || |||
Sbjct 692 ACGGTGGATAAGGCGAA-AGAAGCTAAGGATAAGACGGCAGAGAA--------AG--CAA 740
Query 785 A-GACTACACGGTGGAGAAAGCAAATGAAACTGCGGAGAAGGCGAGGGAAGCGAAAGATA 843
| || | || | ||| | | | | || |||| |||||||||||| | |||||||
Sbjct 741 AGGA--A-ACCGCGGA-ATA-C------ACCT-CGGATAAGGCGAGGGAAACAAAAGATA 788
Query 844 AGACAGCTGAGAAAGTGGGCGAATATAAAGACTACACGGCAGAGAA 889
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 AGACAGCTGAGAAAGTGGGCGAATATAAAGACTACACGGCGGAGAA 834
Score = 244 bits (132), Expect = 1e-63
Identities = 258/317 (81%), Gaps = 16/317 (5%)
Strand=Plus/Plus
Query 504 AAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAAACG 563
||||| |||||||| |||| ||||||||| || ||||||||||||||||||||||| ||
Sbjct 404 AAGACTAAGGAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAAGATAAGACT 463
Query 564 GCGGATAAGACGAAGGAAACCGCAGAATACACGGCAGAGAAGGCAAAG-GAAGCCAAAGA 622
||||| ||||| |||||||||||||| ||| ||||||||||||| ||| ||||| |||||
Sbjct 464 GCGGACAAGACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGC-AAGAGAAGCTAAAGA 522
Query 623 CACG-ACGGCCGAGAAG-CTGGGTGAGTAC-AAAGACTACACGGTGGATAAGGCAAAAGA 679
| | ||||| || ||| || | || || ||| ||||||| ||| ||||||| |||
Sbjct 523 TA-GAACGGCAGACAAGACTAAG-GA-AACGGCAGAATACACGGCGGAGAAGGCAAGAGA 579
Query 680 AGCTAAGGATAAGGCGGCAGAGA-AAGCAAAG-GAA-ACTGCGGAATATACTGCGGATAA 736
|||||| ||||| |||| | || ||| | ||| | | || || || || || ||
Sbjct 580 AGCTAAAGATAAAACGGC-G-GATAAGTTGGGTGAATA-TAAAGATTACACGGCAGAGAA 636
Query 737 GGCAAGGGAAGCAAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGT 796
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GGCAAAGGAAGCCAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGT 696
Query 797 GGAGAAAGC-AAATGAA 812
||| || || ||| |||
Sbjct 697 GGATAAGGCGAAA-GAA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5