BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485680

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53065.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL...   645    0.0  


> AT3G53065.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL 
lectin protein | chr3:19672873-19673471 FORWARD LENGTH=459
Length=459

 Score =  645 bits (349),  Expect = 0.0
 Identities = 424/458 (93%), Gaps = 14/458 (3%)
 Strand=Plus/Plus

Query  1    ATGAAAACTTCACATTGTTTTCTTCGTTGTCATGGCTTAATCATTTTGCTTCTTGTTATG  60
            ||| |||||||||| | | || ||||| ||||| |||| |||||||||||||||||||||
Sbjct  1    ATGGAAACTTCACA-T-TATT-TTCGTCGTCATTGCTTCATCATTTTGCTTCTTGTTATG  57

Query  61   TTTCTTTCATCGGTTTCTAATCTTGCAACAAAAAT---CAACGGTTCTTTTGATGCAAGA  117
            ||||||||||||||||||||||||||  |||||||   |||| |||||||||||||||||
Sbjct  58   TTTCTTTCATCGGTTTCTAATCTTGCTTCAAAAATCAACAACAGTTCTTTTGATGCAAGA  117

Query  118  GGCACTAAAATCGACAGTGATCCGAAACATATCTCCAATTCAAAAGGT--GGAGGATCTC  175
            |||||||||||| | |||||||||||||||||||||||||| ||| ||  ||||||||||
Sbjct  118  GGCACTAAAATCAATAGTGATCCGAAACATATCTCCAATTC-AAA-GTCCGGAGGATCTC  175

Query  176  CTCCACAGGG-CAAAGAATATCCTCTATGCGGGTTAAATAACCCGTCTGAGGATGGTATC  234
            ||| || ||| ||||||||||||||| |||||||  ||||||||||| ||||||||||||
Sbjct  176  CTCAAC-GGGACAAAGAATATCCTCTGTGCGGGTCGAATAACCCGTCAGAGGATGGTATC  234

Query  235  ATATATGCACCTTTTTGCGATAAAGGATATGTTTTTTCTCAG-ATCAAATTCGCTGACTA  293
            |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct  235  ATATATGCACCTTTTTGCGACAAAGGATATGTTTTTTCTC-GAATCAAATTCGCTGACTA  293

Query  294  TGGTCAGCCCAGTGGTTCATCATGTGAAACGCTTAAACGTGGAAACTGCGGCGCGCCCGC  353
            |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  294  TGGTCAGCCCGGTGGTTCATCATGTGAAACGCTTAAACGTGGAAACTGCGGTGCGCCGGC  353

Query  354  TACTTTGAGACTCGTCAAAGAGAATTGTCTTGGAAAAGAACGGTGTAGGATTTATATTAC  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  TACTTTGAGACTCGTCAAAGAGAATTGTCTTGGAAAAGAACGGTGTAGGATTTATATTAC  413

Query  414  AGACGAGATGTTTGGACCGACGCATTGTAAAGGACCTG  451
            ||||||||||||||| ||||||||||||||||||||||
Sbjct  414  AGACGAGATGTTTGGGCCGACGCATTGTAAAGGACCTG  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5