BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485691
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53160.1 | Symbols: UGT73C7 | UDP-glucosyl transferase 73C7 ... 2290 0.0
> AT3G53160.1 | Symbols: UGT73C7 | UDP-glucosyl transferase 73C7
| chr3:19702456-19703976 REVERSE LENGTH=1521
Length=1521
Score = 2290 bits (1240), Expect = 0.0
Identities = 1412/1496 (94%), Gaps = 7/1496 (0%)
Strand=Plus/Plus
Query 1 TGTAACATCTTCTACAATGTGTTCTCATGATCCTCTTCACTTCGTCGTAATACCCTTTAT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TGTAAGATCTTCTACAATGTGTTCTCATGATCCTCTTCACTTCGTCGTAATACCCTTTAT 63
Query 61 GGCCCAAGGCCATATGATCCCATTGGTTGACATCTCCAGGATCTTGTCCCAGCGTCAAGG 120
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct 64 GGCCCAAGGCCATATGATCCCATTGGTCGACATCTCTAGGCTCTTGTCCCAGCGCCAAGG 123
Query 121 CGTGACTGTCTCCATCATCACAACTACTCAAAATGTAGCCAAGATCAAGACTTCACTCTC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CGTGACTGTCTGCATCATCACAACTACTCAAAATGTAGCCAAGATCAAGACTTCACTCTC 183
Query 181 ATCTTCCTCTTTGTTTCCGACCATCAACATCGTTGAAGTTAAGTTTCCGTCTCAGCAAGC 240
|| ||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||| |
Sbjct 184 ATTTTCCTCTTTGTTTGCGACTATCAACATCGTTGAAGTTAAGTTTCTGTCTCAACAAAC 243
Query 241 AGGTTTGCCAGAAGGGTGCGAGAGTGTAGATATGTTGGCTTCAATGGGCGATTTGGTGAA 300
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 244 GGGTTTGCCAGAAGGGTGCGAGAGTTTAGATATGTTGGCTTCAATGGGCGATATGGTGAA 303
Query 301 GTTCTTTGACGCGGCCAACTCCCTTGAGGAGCAAGTTGAGAAAGCTATGGAGGAGATGGT 360
||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 304 GTTCTTTGATGCTGCCAACTCACTTGAGGAGCAAGTTGAGAAAGCTATGGAAGAGATGGT 363
Query 361 TCAGCCACGACCGAGCTGCATCATCGGAGACATGAGCCTTCCTTTCACTTCAAGACTTGC 420
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 364 TCAGCCGCGGCCAAGCTGCATCATTGGAGACATGAGCCTTCCTTTCACTTCAAGACTTGC 423
Query 421 CAAAAAATTGAAGATCCCTAAACTTCTCTTCCATGGGTTTTCTTGTTTCAGCCTCATGTG 480
||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 424 CAAGAAATTCAAGATCCCCAAACTTATCTTCCATGGGTTTTCTTGTTTCAGCCTCATGT- 482
Query 481 C-ATACAAGTGGTTCGACAAAGCGGGATCTT-AAACGTTATAGAATCTAACGACGAGTAT 538
| ||||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||||
Sbjct 483 CTATACAAGTGGTTCGAGAAAGCGGGATCTTGAAA-ATGATAGAATCAAACGACGAGTAT 541
Query 539 TTCGAGTTGCCCAGCTTGCCTGATAGAGTTGAGTTCACTAAACCTCAGGTCTCTGTGCTG 598
|| || |||||| |||||||||| | |||||||||||| |||||||||||||||||| ||
Sbjct 542 TTTGATTTGCCCGGCTTGCCTGACAAAGTTGAGTTCACGAAACCTCAGGTCTCTGTGTTG 601
Query 599 CAGCCTGTTGAAGGAAATATGAAAGAGAGTACGGAGAAGATTATTGAAGCTGATAATGAC 658
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 602 CAACCTGTTGAAGGAAATATGAAAGAGAGTACGGCCAAGATTATTGAAGCTGATAATGAC 661
Query 659 TCTTATGGTGTTATTGTGAACAGTTTTGAAGAGTTAGAGGTTGATTATGCAAGAGAATAT 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 662 TCTTATGGTGTTATTGTGAACACTTTTGAAGAGTTAGAGGTTGATTATGCAAGAGAATAT 721
Query 719 AGGAAAGCAAGGGCTGGGAAAGTTTGGTGCGTTGGACCTGTTTCCTTGTGCAATAAGTTA 778
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 722 AGGAAAGCAAGGGCTGGAAAAGTTTGGTGCGTTGGACCTGTTTCCTTGTGCAATAGGTTA 781
Query 779 GGGTTAGACAAAGCTAAAAGAGGAGATAAGGCTTCCATTGGTCAAGACCAATGTCTTCAA 838
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 782 GGGTTAGACAAAGCTAAAAGAGGAGATAAGGCTTCTATTGGTCAAGACCAATGTCTTCAA 841
Query 839 TGGCTAGACTCTCAAGAAAGGGGTTCGGTGCTCTACGTTTGCCTTGGAAGTCTATGTAAT 898
||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 842 TGGCTTGACTCTCAAGAAACTGGTTCAGTGCTCTACGTTTGCCTTGGAAGTCTATGTAAT 901
Query 899 CTTCCCTTGGCTCAGCTCAAAGAGCTAGGACTAGGTCTTGAGGAATCTAATAAACCTTTC 958
|||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 902 CTTCCCTTGGCTCAGCTCAAAGAGCTGGGACTAGGCCTTGAGGCATCTAATAAACCTTTC 961
Query 959 ATATGGGTTATAAGAGAATGGGGACAACACGGAGATTTAGCAAAGTGGATGCAACAAAGC 1018
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||||||
Sbjct 962 ATATGGGTTATAAGAGAATGGGGAAAATATGGAGATTTAGCAAATTGGATGCAACAAAGC 1021
Query 1019 GGATTCGAAGAGCGGATCAAAGATAGAGGACTTGTGATCAAAGGTTGGGCGCCGCAAGTT 1078
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1022 GGATTTGAAGAGCGGATCAAAGATAGAGGACTGGTGATCAAAGGTTGGGCGCCGCAAGTT 1081
Query 1079 TTCATCCTCTCACACGCATCCATTGGAGGGTTTTTGACTCACTGTGGATGGAACTCGACT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTCATCCTCTCACACGCATCCATTGGAGGGTTTTTGACTCACTGTGGATGGAACTCGACA 1141
Query 1139 TTAGAAGGAATTACTGCAGGAGTACCATTATTGACATGGCCTTTATTTGCTGAACAATTC 1198
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1142 CTAGAAGGAATTACTGCAGGAGTTCCATTATTGACATGGCCTTTGTTTGCTGAACAATTC 1201
Query 1199 TTGAATGAGAAGTTAATTGTGCAGATACTAAAAGCAGGGTTAAAGATAGGAGTAGAGAAA 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTGAATGAGAAGTTAGTTGTGCAGATACTAAAAGCAGGGTTAAAGATAGGAGTAGAGAAA 1261
Query 1259 TCATCTATGAAATATGGAAAAGAAGAGGAGATAGGAGTGATGGTGAGTAGAGAAAGTGTG 1318
| | ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 1262 T--TG-ATGAAATATGGAAAAGAAGAGGAGATAGGAGCGATGGTGAGCAGAGAATGTGTG 1318
Query 1319 AGAAAAGCTGTGGATGAGCTAATGGGTGATAGTgaagaagcagaagatagaagaagaaaa 1378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 AGAAAAGCTGTGGATGAGCTAATGGGTGATAGTGAAGAAGCAGAAGAGAGAAGAAGAAAA 1378
Query 1379 gctaaagaaCTTAGTGAATTGGCAAATAAGGCTTTGGAAGGAGGAGGATCTTCAGATTCT 1438
| || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 GTTACAGAACTTAGTGACTTGGCAAATAAGGCTTTGGAAAAAGGAGGATCTTCAGATTCT 1438
Query 1439 AATATCACATTACTCATTCAAGACATTATGGAGCAATCACAAAATCAAATTTGAAT 1494
||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1439 AATATCACATTGCTCATTCAAGATATTATGGAGCAATCACAAAATCAATTTTAAAT 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5