BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485692
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1177 0.0
> AT3G53170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19704485-19706417 REVERSE LENGTH=1615
Length=1615
Score = 1177 bits (637), Expect = 0.0
Identities = 729/774 (94%), Gaps = 4/774 (1%)
Strand=Plus/Plus
Query 1 ATGTGTTCGACAAAAGTCCCCAACGAACGTATAGGGAAAATGAACTCTGGTCTCATCTCA 60
|||||||||||||| |||||||||||||||| || ||||||||| |||||| | ||||||
Sbjct 151 ATGTGTTCGACAAAGGTCCCCAACGAACGTACAGAGAAAATGAATTCTGGTTTGATCTCA 210
Query 61 ACAAGACACCAAATAGATCCTAAGAAAGAATTGTCTCGGATTCTGAGAACAGATGCTGCT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ACAAGACACCAAGTAGATCCTAAGAAAGAATTGTCTCGGATTCTGAGAACAGATGCTGCT 270
Query 121 GTGAAGGGCATTGAGAGGAAAGCCAACTCCGAAAAGTACTTAACTTTATGGCCAAAAGCT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 271 GTGAAGGGCATTGAGAGGAAAGCCAATTCCGAAAAGTACTTAACTTTATGGCCAAAAGCT 330
Query 181 GTTCTTGAAGCTCTTGAAGAAGCTATCAAAGAGAATCGATGGCAGTCTGCTCTCAAGATT 240
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTTCTAGAAGCTCTTGACGAAGCTATCAAAGAGAATCGATGGCAGTCTGCTCTCAAGATT 390
Query 241 TTCCATCTTCTTAGGAAGCAGCATTGGTATGAACCAAGATGCAAAACATACACAAAGCTA 300
||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 391 TTCAATCTTCTTAGGAAGCAGCATTGGTATGAACCAAGATGCAAAACTTATACAAAGCTG 450
Query 301 TTTAAAGTGCTTGGGAATTGCAAACAGCCTGATCAAGCCAGCTTGCTTTTCGAAGTTATG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 451 TTTAAAGTGCTTGGGAATTGTAAACAGCCTGATCAAGCCAGCTTGCTTTTCGAAGTTATG 510
Query 361 TTGTCTGAAGGACTGAAACCCACCATTGATGTGTATACGTCTCTTATCGCTGTTTATGGC 420
|| ||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 511 TTATCTGAAGGATTGAAACCAACCATTGATGTGTATACCTCTCTTATCTCTGTTTATGGC 570
Query 421 AAAAGCGAGCTTCTAGACAAGGCGTTTTCTACGCTTGAGTATATGAAATCGGTTAGTGAT 480
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 571 AAAAGCGAGCTTCTAGACAAGGCGTTTTCTACACTTGAGTATATGAAATCTGTTAGTGAC 630
Query 481 TGCAAGCCAGATGTGTTCACCTTTACTGTTCTCATAAGATGTTGCTGCAAACTTGGTCGG 540
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 631 TGCAAGCCAGATGTGTTCACCTTTACTGTTCTCATCAGTTGTTGCTGCAAACTGGGTCGG 690
Query 541 TTTGATCTGGTTAAACGTATCATTCTTGAGATGTCATATCTCGGAGTTGGATGCAGCACG 600
||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 691 TTTGATCTGGTTAAAAGTATCGTTCTTGAGATGTCGTATCTTGGAGTTGGATGCAGCACG 750
Query 601 GTTACTTACAATACTATTATTGATGGGTATGGAAAGGCCGGCTTGTTTGAGGAAATGGAA 660
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 751 GTTACTTACAATACTATTATTGATGGGTATGGAAAGGCTGGAATGTTTGAGGAAATGGAA 810
Query 661 AATGTTCTGGCTGATATGATCGAGGATGGAGATTCTCTTCCGGATGTCT-TCACGCTTAA 719
| |||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||
Sbjct 811 AGTGTTCTGGCTGATATGATCGAGGACGGAGATTCTCTTCCGGATGTTTGT-ACGCTTAA 869
Query 720 CTCGATAATTGGGTCGTC-GGAAATGGTGGCA-CACGAGGAAGATGGAGAGCTG 771
|||||| |||||||| | ||||||||| ||| || ||||||||||||||||||
Sbjct 870 CTCGATCATTGGGTCATATGGAAATGGTCGCAACATGAGGAAGATGGAGAGCTG 923
Score = 822 bits (445), Expect = 0.0
Identities = 489/511 (96%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 778 ATCACTACATTTAACATACTGATCCTGTCATTTGGAAAAACTGGAATGTATAAGAAGATG 837
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 961 ATCACTACATTTAACATACTGATCCTGTCATTTGGAAAAGCTGGTATGTATAAGAAGATG 1020
Query 838 AGCTCGGTAATGGATTTCATGGAGAAAAGGTTCTTCTCCCTGACGACTGTCACTTACAAT 897
|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGCTCTGTTATGGATTTTATGGAGAAAAGGTTCTTCTCCCTGACGACTGTCACTTACAAT 1080
Query 898 ATAGTGATCGAGACGTTTGGAAAAGCTGGAAAAATCGAGAAAATGGATGATGTATTCAGG 957
|||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1081 ATAGTGATTGAGACGTTTGGAAAAGCTGGAAGAATTGAGAAAATGGATGATGTATTCAGG 1140
Query 958 AAAATGAAGTATCAAGGAGTGAAACCAAACTCAATCTCTTATTGTTCGCTTGTCAACGCG 1017
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1141 AAAATGAAGTATCAAGGAGTGAAACCAAACTCAATCACTTATTGTTCGCTTGTTAACGCG 1200
Query 1018 TATAGCAAAGCTGGTCTTGTCGGTAAGATAGATTCGATTTTGAGGCAAATTGTGAATTCA 1077
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1201 TATAGCAAAGCAGGTCTTGTCGTTAAGATAGATTCGGTTTTGAGGCAAATTGTGAATTCA 1260
Query 1078 GATGTGGTACTGGATACACCGTTCTTCAATTGCATAATCAATGCATACGGTCAGGCTGGT 1137
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 GATGTGGTACTGGATACACCGTTCTTCAATTGCATAATCAATGCATATGGTCAGGCTGGT 1320
Query 1138 GATTTGGCCACGATGAAGGAACTATACATACAAATGGAAGAGAGAAAATGTAAGCCTGAT 1197
|||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GATTTGGCTACAATGAAAGAATTATACATACAAATGGAAGAGAGAAAATGTAAGCCTGAT 1380
Query 1198 AAAATCACTTTTGCGACTATGATCAAAACCTATACGGCTCATGGGATATTCGATGCAGTC 1257
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1381 AAAATCACTTTTGCTACTATGATCAAAACCTATACTGCTCATGGGATATTCGATGCAGTC 1440
Query 1258 CAGGAACTCGAGAAACAAATGATTTCCACTG 1288
||||||||||||||||||||||||||| |||
Sbjct 1441 CAGGAACTCGAGAAACAAATGATTTCCTCTG 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5