BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485694
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53190.1 | Symbols: | Pectin lyase-like superfamily protein... 2649 0.0
> AT3G53190.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:19713928-19717595 FORWARD LENGTH=1753
Length=1753
Score = 2649 bits (1434), Expect = 0.0
Identities = 1658/1761 (94%), Gaps = 36/1761 (2%)
Strand=Plus/Plus
Query 1 AGTGGAAAACAACTTCACTCTCTCTCTTcaaaaagaacaaaagaaaaacaaaaatacaaa 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 AGTGGAAAACAACTTCACTCTCTCTCTTC-------A-AAAAGAAAAACAAAAATACAAA 52
Query 61 agccaa-gaaagccattattacaaaagcaataacacactgtaaaaaagcCACTCACGAAC 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AGCCAAGGAAAGCCATTATTACAAAAGCAATAACACACTGTAAAAAAGCCACTCACGAAC 112
Query 120 ACTGGTCAGTAACCagagagagaagaagaag---aaCAAGCCATGTCTTAACTCTTATTA 176
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 113 ACTCCTCAGTAACCAGAGAGAGAAGAAGAAGAACAACAAGCCATGTCTTAACTC---TTA 169
Query 177 ACTACTCTCTTCTTCTCCCTCCTTTTAACTAACCAAAAACCCT-AAA----T----TCAT 227
|||| ||||||||||||||||| ||| || ||||||||||||| ||| | |||
Sbjct 170 ACTAATCTCTTCTTCTCCCTCCATTTCACCAACCAAAAACCCTAAAATCCTTAAAATCAC 229
Query 228 AAGTTTCTTCAACAATGATGCTTCAAAGAAGCTGCATTGTACTTCTCTTCTCTCTTTTTC 287
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 230 AAGTTTCTTCAGCAATGATGCTTCAAAGAAGCTGCATTGTACTTTTCTTCTCTCTTTTTC 289
Query 288 TGTTCACTCCACAAATGGGTTTCTCCATGCTCAACAGAACTCTACTTCTCATACCACATC 347
|||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||
Sbjct 290 TGTTGGTTCCACAAATGGTTTTCTCGATGCTCAACAGAACTCTTCTTCTCATACCACATC 349
Query 348 CTGACCCGGAACTAGTCGCTTATGAAGTTCAGTGGAAAGTAAATGCATCTATAACAAGAC 407
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 350 CTGACCCGGAACTAGTCGCTTATCAAGTTCAGTGGAAAGTAAATGCATCTATAACAAGGC 409
Query 408 GTCAAGCTCTAGACACGACGGACCAGGCCGGTTCAAACCCGTGCT-TCACCGGTAACCCA 466
|||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||
Sbjct 410 GTCAAGCTCTAGACACGACGGACCAGGCCGGTTCGACCCCGTG-TATCACCGGTAACCCA 468
Query 467 ATTGATGACTGTTGGAAATGTGACCCAAACTGGCCTAATAACCGACAAGGTCTAGCAGAT 526
|| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 469 ATCGATGACTGTTGGAAATGTGACCCAAACTGGCCCAATAACAGACAAGGTCTAGCAGAT 528
Query 527 TGTGGTATCGGGTTCGGACAGTACGCATTAGGAGGCAAAGGTGGTCAGTTTTACTTCGTC 586
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 529 TGTGGTATCGGGTTCGGACAGTACGCGTTGGGAGGCAAAGGTGGTCAGTTTTACTTTGTC 588
Query 587 ACTGATTCTTCCGACGATGATGCCGTCGACCCTAAACCAGGCACTCTCAGATATGGAGTG 646
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 589 ACTGATTCTTCCGACGATGATGCCGTCAACCCTAAACCGGGCACTCTCAGATATGGGGTG 648
Query 647 ATACAAGAAGAGCCATTGTGGATAGTGTTCCCAAGCAACATGATGATTAAACTAAAGCAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATACAAGAAGAGCCATTGTGGATAGTGTTCCCAAGCAACATGATGATTAAACTAAAGCAA 708
Query 707 GAGTTAATATTCAATAGTTACAAAACACTTGATGGAAGAGGAGCTAATGTTCACATTGTT 766
||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 709 GAGCTAATATTCAATAGTTACAAGACACTTGATGGGAGAGGAGCTAATGTTCACATTGTT 768
Query 767 GGTGGTGGCTGCATCACTCTTCAATATATCTCCAATATCATCATTCACAACATTCATATC 826
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 769 GGTGGTGGCTGCATCACTCTTCAATATGTCTCCAATATCATCATTCACAACATCCATATC 828
Query 827 CACCATTGTTACCAATCCGGGAATACTAACGTGCGGTCAAGTCCAACGCACTACGGGTTC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 829 CACCATTGTTACCAATCCGGGAATACTAACGTGCGGTCAAGTCCAACGCACTATGGGTTC 888
Query 887 AGAACGAAATCGGACGGTGATGGTATCTCTATATTCGGATCAAAGGACATTTGGATCGAC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGAACGAAATCGGACGGTGATGGTATCTCTATATTCGGATCAAAGGACATTTGGATCGAC 948
Query 947 CATTGTTCTCTATCGAGATGCAAGGACGGTCTGATAGATGCGGTGATGGGTTCCACAGGA 1006
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 949 CATTGTTCTCTATCGAGATGCAAGGACGGTCTGATAGATGCGGTAATGGGTTCCACAGGA 1008
Query 1007 ATTACTATATCGAACAACTTCTTCTCTCACCATAATGAAGTCATGCTTCTTGGTCACAGC 1066
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATAACTATATCGAACAACTTCTTCTCTCACCATAATGAAGTCATGCTTCTTGGTCACAGC 1068
Query 1067 GATCACTATGAACCAGACAGTGGCATGCAGGTAACAATTGCGTTTAATCACTTTGGAGAG 1126
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GACCACTATGAACCAGACAGTGGCATGCAGGTAACAATTGCGTTTAATCACTTTGGAGAG 1128
Query 1127 AAATTGATACAAAGGATGCCGAGGTGTCGACGTGGATATATCCATGTTGTTAATAATGAT 1186
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1129 AAATTGATACAAAGGATGCCGAGGTGTCGACGTGGATATATCCATGTGGTTAATAACGAT 1188
Query 1187 TTTACTCAATGGGAAATGTATGCGATTGGTGGTAGCGGTAACCCAACTATTAACAGTCAG 1246
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1189 TTTACTCAATGGGAAATGTATGCCATTGGCGGTAGCGGTAACCCGACTATTAACAGTCAG 1248
Query 1247 GGTAATCGGTACACCGCCCCAACCAACCCATTCGCCAAAGAGGTGACTAAGAGAGTGGAA 1306
||||| || |||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 1249 GGTAACCGCTACACCGCCCCAACCAACCCGTTTGCCAAGGAGGTGACAAAGAGAGTGGAA 1308
Query 1307 ACACCGGATGGGGATTGGAAAGGGTGGAATTGGAGATCAGAGGGGGACATTTTGGTGAAT 1366
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1309 ACACCGGATGGTGATTGGAAAGGGTGGAATTGGAGATCGGAGGGGGACATTTTGGTGAAT 1368
Query 1367 GGAGCGTTCTTTGTGGCATCCGGTGAAGGTGCGGAAATGAGGTATGAGAAGGCATATAGC 1426
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1369 GGAGCCTTCTTCGTGGCATCCGGGGAAGGTGCGGAAATGAGGTATGAGAAGGCATATAGC 1428
Query 1427 GTCGAGCCTAAGTCCGCCTCATTCATTACACAAATCACATTTCACTCAGGTGTTCTTGGC 1486
||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1429 GTCGAGCCTAAATCCGCCTCATTCATCACCCAAATCACATTTCACTCTGGTGTTCTTGGC 1488
Query 1487 GTCGGCGGCAGGAATAACAATCTGGGGATGTGGACTACTACTGGATCGGAAGGTAATAGC 1546
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1489 GTTGGTGGCAGGAATAACAATCTGGGGATGTGGACTACTACTGGATCGGAAGGTACTAGC 1548
Query 1547 GGTTTAGATTCTTACAACGACTATACCGATGAAATGTCTG-CTGCCGGTTCAACTAACCG 1605
|||||||||||||| || |||||||||||||||||||||| | || |||||||| |||||
Sbjct 1549 GGTTTAGATTCTTATAATGACTATACCGATGAAATGTCTGGC-GCTGGTTCAACCAACCG 1607
Query 1606 GTTATCTTTTTCAGTTCTTGTTTTAGCATTCATGCTAAGTTCGATATCATATTTGGTCAT 1665
|||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
Sbjct 1608 GTTATCTTTTTCAGTTCTTGTTTT--C-TT---GCTAAGTTCGATATCATATTTGGTCGT 1661
Query 1666 GTCCACTTCTTCAACCCAAATGTTTATGTTGTAACATGAATTGAATTTACCTATATTTTA 1725
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1662 GTTCACTTCTTCAACCCAAATGTTTATGTTGTAACATGAATTGAATTTACCTAT-TTT-A 1719
Query 1726 TCAAGGAACAAGCGAAAAGTT 1746
||||||||||||| |||||||
Sbjct 1720 TCAAGGAACAAGCAAAAAGTT 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5