BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485695
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53200.1 | Symbols: AtMYB27, MYB27 | myb domain protein 27 |... 1212 0.0
> AT3G53200.1 | Symbols: AtMYB27, MYB27 | myb domain protein 27
| chr3:19718282-19719462 REVERSE LENGTH=929
Length=929
Score = 1212 bits (656), Expect = 0.0
Identities = 768/821 (94%), Gaps = 11/821 (1%)
Strand=Plus/Plus
Query 1 AAAGCACAAACTTAGAAAGGATTCAATTAAG--TAATAACACaaagaaagagaagaagaa 58
||||||||| |||||||||||| ||||||| ||||||||||||| || | || ||
Sbjct 1 AAAGCACAATTTTAGAAAGGATTTAATTAAGTATAATAACACAAAG-AA-A-CAG-AG-T 55
Query 59 agaaagaaagaaaaatggattttaagaaggaagaaaCACTTCGTAGAGGGCCATGGCTTG 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 56 A-AAAGAAAGAAAAATGGATTTTAAGAAGGAAGAAACACTTCGTAGAGGGCCATGGCTCG 114
Query 119 AAGAAGAAGACGAACGGCTAGTGAAGTTCATAACCCTTTTGGGAGAACGTCGTTGGGATT 178
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 115 AAGAAGAAGACGAACGGCTAGTGAAGGTCATTAGTCTTTTGGGAGAACGTCGTTGGGATT 174
Query 179 CTTTAGCAATAGTTTCCGGTTTGAAGAGGAGTGGTAAGAGTTGCAGGCTAAGGTGGATGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTTTAGCAATAGTTTCCGGTTTGAAGAGGAGTGGTAAGAGTTGCAGGCTAAGGTGGATGA 234
Query 239 ACTATCTGAATCCGAGTCTGAAGCGTGGGCCGATGAGTCAAGAAGAAGAGAGAATCATCT 298
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 235 ACTATCTGAATCCGACTCTGAAGCGTGGACCGATGAGTCAAGAAGAAGAGAGAATCATCT 294
Query 299 TTCAGCTCCATGCTCTCTGGGGTAACAAGTGGTCGAAGATTGCGAGAAGATTACCCGGTA 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCAGCTCCATGCTCTATGGGGTAACAAGTGGTCGAAGATTGCGAGAAGATTACCCGGTA 354
Query 359 GGACTGATAACGAGATTAAGAACTTTTGGAGAACTCATTCTAGAAAGAAAGAGGAAGCTC 418
|||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 355 GGACTGATAACGAGATAAAGAACTATTGGAGAACTCATTATAGAAAGAAACAGGAAGCTC 414
Query 419 AAAACTATGTAAAGCTGTTTGAGTTCAGAGGAAAAACAGGAGAAGAATTGTTGCACAAGT 478
||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 415 AAAACTATGGAAAGCTCTTTGAGTGGAGAGGAAATACAGGAGAAGAATTGTTGCACAAGT 474
Query 479 ATAAGGAAACAGAGATCACTAGGACAAGGACAACGTCTCAAGAACATGGTTTTGATGAAG 538
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 475 ATAAGGAAACAGAGATCACTAGGACAAAGACGACGTCTCAAGAACATGGTTTTGTTGAAG 534
Query 539 TTGTGAGCATGGAAAGTGCTAAAGAAACCAATTGTGGTATTTGTGGAAGACAAAGCTACG 598
|||||||||||||||||| ||||||| |||| ||||| || |||||||| |||||| ||
Sbjct 535 TTGTGAGCATGGAAAGTGGTAAAGAAGCCAACGGTGGTGTTGGTGGAAGAGAAAGCTTCG 594
Query 599 GTGTTATGAATTCACCGTATGAAAATCGGATTTCGGATTGGATATCAGAGATTTCGCCAG 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 595 GTGTTATGAAATCACCGTATGAAAATCGGATTTCGGATTGGATATCAGAGATTTCTACTG 654
Query 659 ACCAGAGTGAAGCAAATCTTTCAGAAGACCACAGCAGCAGTAGC---AGTGAGAACAACA 715
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |
Sbjct 655 ACCAGAGTGAAGCAAATCTTTCAGAAGATCACAGCAGCAATAGCTGCAGTGAGAACAATA 714
Query 716 TTAACATTGGTACTTGGTGGTTTCAAGAGACTAGGGACTTTGAGGAGTTTTCATGTTCTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTAACATTGGTACTTGGTGGTTTCAAGAGACTAGGGACTTTGAGGAGTTTTCATGTTCTC 774
Query 776 TATGGTCATAATTCTTAAGTTTGTTTATTTACTTTTTAACT 816
||||||||||||||| ||||| |||||||||||||||||||
Sbjct 775 TATGGTCATAATTCTAAAGTTGGTTTATTTACTTTTTAACT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5