BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485696
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53210.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1714 0.0
> AT3G53210.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:19720165-19721875 FORWARD LENGTH=1238
Length=1238
Score = 1714 bits (928), Expect = 0.0
Identities = 1105/1190 (93%), Gaps = 13/1190 (1%)
Strand=Plus/Plus
Query 1 CTTCCGGCGGAGAAAGATGTCTCCGATACCGGAAAGGGCAAAGCTTCACATAGCTATGGT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CTTCCGGCGGAGAACGATGTCTCCGATACCGGAAAGGGCAAAGCTTCACATAGCTATGGT 61
Query 61 GGTGTTTCAGACAGGATACGCAGGGAATCATGTGATCGTAAGATACGCTCTAAACTTAGG 120
||||||||||||||| ||||| || ||||| |||||| | ||||| ||||||||||||||
Sbjct 62 GGTGTTTCAGACAGGCTACGCTGGTAATCACGTGATCATGAGATATGCTCTAAACTTAGG 121
Query 121 AGTAAGCAAGCTCGTCTTCCCACTTTACCGCACCATCGTCGCTTTCTCTGTTCTTGCTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGTAAGCAAGCTCGTCTTCCCACTTTACCGCACCATCGTCGCTTTCTCTGTTCTTGCTCC 181
Query 181 CTCTGCTTACTTCCTTGaaaaaaaaGAAAGACCGGCCATGAAAACCAGTTTTCTCATTCA 240
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 182 CTCTGCTTACTTCCTTGAAAAAAAAGAAAGACCGGCGATGAAAATCAGTTTTCTGATTCA 241
Query 241 GTTCTTCCTTCTTGGACTCCTTAGAATAACATTAAACCAAGGATTTTACATCTTTGGATT 300
|||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 242 ATTCTTCCTTCTTGGACTCGTTGGAATAACGTTAAACCAAGGATTTTACATCTTTGGATT 301
Query 301 GGACAATACCTCACCAACATTCGCATCAGCAACTGAAAATGTTGTTCCTGCTGTTTCATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGACAATACCTCACCAACATTCGCATCAGCAACTGAAAATGTTGTTCCTGCTGTTTCATT 361
Query 361 CCTCATGGCAGCGTCGCTCGGAATAGAGAAGGTGAAATGGAAGAGGAAAGACGGTATAGC 420
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 362 CCTCATGGCAGCGTTGCTCGGAATAGAGAAGGTGGAATGGAAGAGGAAAGATGGTATAGC 421
Query 421 TAAAGTGGTGGGCACAATTGTATCCGTCGCAGGCTCTTTGGTTATAACACTCTATAAAGG 480
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 422 CAAAGTGGTGGGGACAATTGTATCTGTCGCAGGCTCTTTGGTTATAACACTCTATAAAGG 481
Query 481 ACCCACCATTTACCAACCGAGTTTGCGTTTAATGAACCAACCTATCAAAGCTGAAGAAGC 540
||| |||||||||||||||||| || | || |||||||| |||| ||| ||||||||||
Sbjct 482 ACCAACCATTTACCAACCGAGTCTGAATATAGTGAACCAAACTATTAAACCTGAAGAAGC 541
Query 541 AGAGGAACAAAACAAGAACTGGACATTGGGATGTCTATGTTTGATGGGTCACTGTTTATG 600
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 542 AGAGGAAGAAAACAAGAACTGGACGTTGGGATGTCTCTGTTTGATGGGTCACTGTTTATG 601
Query 601 TTGGTCAAGTTGGATTGTGTTGCAGTCACCATTGCTTAAGAAGTACCCAGCTCGCTTCTC 660
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 602 TTGGTCAAGTTGGATTGTGTTACAATCACCATTGCTTAAAAAGTACCCAGCTCGCTTCTC 661
Query 661 CTTCGTCTCCT-TCTCTTGCTTTTTCGCCGTGTTACAGTTCTTTGGAATCTCTGCTTATT 719
||||||||||| | |||||||||||||| ||| |||||||||||||||| || |||||||
Sbjct 662 CTTCGTCTCCTAT-TCTTGCTTTTTCGCAGTGATACAGTTCTTTGGAATTTCGGCTTATT 720
Query 720 TCGAGAGAGATCAAGAGAGATGGAAGATAACATCAGGAGGCGAATTATATGCATTACTAT 779
|||||||||||| |||||| |||||||||| |||||||||||||||||| || ||||| |
Sbjct 721 TCGAGAGAGATCTAGAGAGGTGGAAGATAATATCAGGAGGCGAATTATACGCGTTACTCT 780
Query 780 ACACCGGTTTAATTGGTTCAGCAATGGTGTTTGCAATACAAATATATGTGGTGGAGAGAG 839
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 781 ACACTGGTTTAGTTGGTTCAGCAATGGTGTTTGCAATACAAATATATGTAGTGGAAAGAG 840
Query 840 GAGGACCTCTGTTTGTATCAGCGTATTTGCCTCTTCAAACTTTAATTGCTGCTATTTTAG 899
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 841 GAGGACCTCTGTTTGTATCAGCGTATTTGCCTCTTCAAACTTTGATTGCTGCTGTTTTAG 900
Query 900 CCACTTTTGCTCTTGGTGAACACTTCTACCTTGGAGGATTGATTGGTGCAATACTAATCA 959
| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 901 CTACTTTAGCTCTTGGTGAACACTTTTACCTTGGAGGATTGATAGGTGCAATACTAATCA 960
Query 960 TGAGTGGACTATACTTGGTTGTGATGGGAAAGAGTTGGGAGAATCAAGCTTTTTGCCAAC 1019
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 TGAGTGGACTATACTTAGTTGTGATGGGAAAGAGTTGGGAGAATCAAGCTCTTTGCCAAC 1020
Query 1020 AACAACAACACATGATTTCTTCAGAAGCATCCGAATTTGGTGGTGAAGAAAACCACCATA 1079
|||||||||||||||||||||||| |||||| || ||||||| ||||||| || ||||||
Sbjct 1021 AACAACAACACATGATTTCTTCAGCAGCATCAGATTTTGGTGATGAAGAAGACTACCATA 1080
Query 1080 ATAATAATAAACCAAGATCTTCTCTTAATCAACCATTAATTTCTTCTTAAATTTTGGTAG 1139
||||||| | ||||||||| || ||| |||||||||||||||||| ||||||||| |||
Sbjct 1081 ATAATAA-A--CCAAGATCTCCTATTAGTCAACCATTAATTTCTTCCTAAATTTTGTTAG 1137
Query 1140 ATGCTATTTATGT-TATAAAAGGTTGTTCCTAGTTCCTACTTTCTTTCTC 1188
|| |||||||||| | |||| || ||||||||||||| |||| |||
Sbjct 1138 ATCCTATTTATGTCT-TAAA---TT---CCTAGTTCCTACTCTCTTCCTC 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5