BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485697

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53220.1 | Symbols:  | Thioredoxin superfamily protein | chr...   641    0.0  


> AT3G53220.1 | Symbols:  | Thioredoxin superfamily protein | chr3:19721994-19722702 
FORWARD LENGTH=506
Length=506

 Score =  641 bits (347),  Expect = 0.0
 Identities = 410/440 (93%), Gaps = 6/440 (1%)
 Strand=Plus/Plus

Query  12   AAACAAAAACAATGAGCAAGCAAGAATCGGAGGGAGCAAATATTGATTTCGAATCCAAAT  71
            ||||||||| |||||| ||||||||||| |||||||| ||| |||| |||||||||||||
Sbjct  29   AAACAAAAA-AATGAGAAAGCAAGAATCAGAGGGAGCGAATCTTGAATTCGAATCCAAAT  87

Query  72   CAAATCACAATGGCAACGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG  131
            ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  88   CAAATGACAATGGAAATGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG  147

Query  132  ACGATATCAAA-TCTTCCAAATCTCCGGCTGTTATTAACTACGGAGCTTCATGGTGTGGA  190
            |||| || ||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  148  ACGACAT-AAAGTCTTCCAAATCTCCGGCTGTTATTAACTATGGAGCTTCTTGGTGTGGA  206

Query  191  GTTTGTAGCCAAATTCTTCCTGCATTCCAAAAGCTCAGCAAAAGTTTCTCGAAGCTCAAG  250
            ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  207  GTTTGTAGCCAGATTCTTCCTGCATTCCGAAAGCTCAGCAACAGTTTCTCGAAGCTCAAG  266

Query  251  TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGCCACATCCGTTACACACCC  310
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  267  TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGTCACATCCGTTACACACCC  326

Query  311  ACATTTCAGTTTTACAGAGACGGCGAAAAAGTCGATGAGATGTTTGGAGCTGGTGAAGAG  370
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct  327  ACGTTTCAGTTTTACAGAGACGGCGAGAAAGTCGATGAGATGTTTGGAGCTGGTGAACAG  386

Query  371  AGACTCCATGATCGTCTTTGGCTTCACTCTTGACTATGTTCATAAAA-ATCAAATAATTA  429
            || |||||||||||||||||||||||||||||| ||||||||| ||| || || || | |
Sbjct  387  AGGCTCCATGATCGTCTTTGGCTTCACTCTTGAATATGTTCATCAAATATTAACTA-TGA  445

Query  430  AA-TCTGCATTCCTTTTGTG  448
            || |||||||||||||||||
Sbjct  446  AAATCTGCATTCCTTTTGTG  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5