BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485697 Length=448 Score E Sequences producing significant alignments: (Bits) Value AT3G53220.1 | Symbols: | Thioredoxin superfamily protein | chr... 641 0.0 > AT3G53220.1 | Symbols: | Thioredoxin superfamily protein | chr3:19721994-19722702 FORWARD LENGTH=506 Length=506 Score = 641 bits (347), Expect = 0.0 Identities = 410/440 (93%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 12 AAACAAAAACAATGAGCAAGCAAGAATCGGAGGGAGCAAATATTGATTTCGAATCCAAAT 71 ||||||||| |||||| ||||||||||| |||||||| ||| |||| ||||||||||||| Sbjct 29 AAACAAAAA-AATGAGAAAGCAAGAATCAGAGGGAGCGAATCTTGAATTCGAATCCAAAT 87 Query 72 CAAATCACAATGGCAACGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG 131 ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 CAAATGACAATGGAAATGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG 147 Query 132 ACGATATCAAA-TCTTCCAAATCTCCGGCTGTTATTAACTACGGAGCTTCATGGTGTGGA 190 |||| || ||| ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 148 ACGACAT-AAAGTCTTCCAAATCTCCGGCTGTTATTAACTATGGAGCTTCTTGGTGTGGA 206 Query 191 GTTTGTAGCCAAATTCTTCCTGCATTCCAAAAGCTCAGCAAAAGTTTCTCGAAGCTCAAG 250 ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 207 GTTTGTAGCCAGATTCTTCCTGCATTCCGAAAGCTCAGCAACAGTTTCTCGAAGCTCAAG 266 Query 251 TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGCCACATCCGTTACACACCC 310 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 267 TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGTCACATCCGTTACACACCC 326 Query 311 ACATTTCAGTTTTACAGAGACGGCGAAAAAGTCGATGAGATGTTTGGAGCTGGTGAAGAG 370 || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 327 ACGTTTCAGTTTTACAGAGACGGCGAGAAAGTCGATGAGATGTTTGGAGCTGGTGAACAG 386 Query 371 AGACTCCATGATCGTCTTTGGCTTCACTCTTGACTATGTTCATAAAA-ATCAAATAATTA 429 || |||||||||||||||||||||||||||||| ||||||||| ||| || || || | | Sbjct 387 AGGCTCCATGATCGTCTTTGGCTTCACTCTTGAATATGTTCATCAAATATTAACTA-TGA 445 Query 430 AA-TCTGCATTCCTTTTGTG 448 || ||||||||||||||||| Sbjct 446 AAATCTGCATTCCTTTTGTG 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21313525576 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5