BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485699
Length=2660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53240.1 | Symbols: AtRLP45, RLP45 | receptor like protein 4... 3993 0.0
> AT3G53240.1 | Symbols: AtRLP45, RLP45 | receptor like protein
45 | chr3:19733766-19739181 FORWARD LENGTH=3109
Length=3109
Score = 3993 bits (2162), Expect = 0.0
Identities = 2518/2687 (94%), Gaps = 36/2687 (1%)
Strand=Plus/Plus
Query 1 GAATCCATACATTCCCCTGATGCTCTTCCTCTACTGAATTTAACTTTGTTCCATCCCTTT 60
|||||||||| | |||| ||| ||||||| | | |||| ||||||| ||| ||||||||
Sbjct 387 GAATCCATACGTCCCCCAGATCCTCTTCCCCAATTGAACCTAACTTTTTTCTATCCCTTT 446
Query 61 GAGGAGCTTCAGAGTCTCAACTTGTCGTCCGGATACTTCAAAGGCTGGTTCGACAAAAGA 120
|| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 447 GAAGAGCTTCAGAGTCTCAACTTGTCGTCGGGGTACTTCAAAGGCTGGTTCGACGAAAGA 506
Query 121 CAAGGTGGTAAGGGCCTGGGAAGTTTCAA-AAATCTTGAGACTCTGGATCTCGGTGTCAA 179
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 507 AAAGGTGGTAAGGGCCTGGGAAGTTT-AAGAAATCTTGAGACTCTGGATCTCGGTGTCAA 565
Query 180 CTTTTACGATAGCAGTGTCTTCCCATACTTGAATGAGGCTGTGTCTCTCAAGACTTTGAT 239
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 566 CTTTTACGATACCAGTGTCTTGCCATACTTGAATGAGGCTGTGTCGCTCAAGACTTTGAT 625
Query 240 TCTCCGTGACAACTTATTTAAGGGTGGCTTTCCTGTTCAAGAACTAAGAAATCTAACAAG 299
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 626 TCTCCATGACAACTTATTTAAGGGTGGCTTTCCTGTTCAAGAACTAATAAATCTGACAAG 685
Query 300 TTTGGAAGTACTGGATCTAAAATTCAACGAA-TTCAGTGGCCAGTTACCAACACAAGAAC 358
|||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||| |
Sbjct 686 TTTGGAAGTACTAGATCTGAAATTCAAC-AAGTTCAGTGGCCAGTTACCAACACAAGAGC 744
Query 359 TCACCAATCTGCGAAACCTCAGAGCTTTGGATCTAAGC---AAT-AA---TC-AGTTC-- 408
|||| |||||||||||||||||||| |||||||||||| ||| || || ||||
Sbjct 745 TCACTAATCTGCGAAACCTCAGAGCCTTGGATCTAAGCAATAATAAATTCTCTGGTTCAT 804
Query 409 T-------C-TGGAATTTGTAGATTGGAGCAGTTGCAAGAGCTTCGTCTTAGTCGAAACA 460
| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 805 TGCAAAAACAAGGAATTTGTAGATTAGAGCAGTTGCAAGAGCTTCGTCTTAGTCGAAACA 864
Query 461 GATTTGTGGGTGAAATTCCGCTCTGTTTTTCGAGGTTCTCCAAACTCCAAGTTCTTGATC 520
|||||| ||||||||| || |||||||||||||| ||||||||||||| |||||||||||
Sbjct 865 GATTTGAGGGTGAAATCCCACTCTGTTTTTCGAGATTCTCCAAACTCCGAGTTCTTGATC 924
Query 521 TATCATCGAATCACCTAAGTGGGAAGATTCCATATTTCATCAGTGACTTCAAATCCATGG 580
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TATCATCAAATCACCTAAGTGGGAAGATTCCATATTTCATCAGTGACTTCAAATCCATGG 984
Query 581 AATACTTATCACTACTCGATAATGAATTTGAAGGCTTGTTCTCGTTGGGTTTGATCACCA 640
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 985 AATACTTATCACTTCTCGATAATGACTTTGAAGGCTTGTTCTCGTTGGGTTTGATCACTG 1044
Query 641 AATTAGCAGAGCTCAAGGTTTTTAAACTCTCTTCCAGGTCTGGTATGCTGCAAGTAGAAG 700
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1045 AATTAACAGAGCTCAAGGTTTTTAAACTCTCTTCCAGGTCTGGTATGCTGCAAATAGTAG 1104
Query 701 AGACTAACGTTTCCAGTGGCCTGCAATCGCAGCTAAGTAGTA-TCTCATTGCCACACTGC 759
|||||||||||||| |||| |||||||||||||||||||||| | | ||| ||||||||
Sbjct 1105 AGACTAACGTTTCCGGTGGTCTGCAATCGCAGCTAAGTAGTATTAT-GTTGTCACACTGC 1163
Query 760 AACCTTGGAAAAATCCCTGGTTTTCTTTGGTATCAGAAGGAATTGTGGGTCATCGATCTC 819
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1164 AACCTTGGAAAAATCCCTGGTTTTCTTTGGTATCAGCAGGAATTGCGGGTCATCGATCTC 1223
Query 820 TCCAACAATATGTTATCCGGAGTGTTCCCCACTTGGCTGCTGGAAAATAACACAGAGCTT 879
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCCAACAATATATTATCCGGAGTGTTCCCCACTTGGCTGCTGGAAAATAACACAGAGCTT 1283
Query 880 CAGGCACTGTTGTTACAGAACAACTCATACAAAACACTTACACTTCCAAGAACAATGCGC 939
||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1284 CAGGCCCTGTTGTTACAGAACAACTCATTCAAAACACTTACACTTCCAAGAACCATGCGC 1343
Query 940 AAGTTACAGTTTTTGGATCTTTCGGCGAACT-ATTTTAACAATCAACTCCCTAAGGATGT 998
| | | ||| ||||||||||||||| ||| | |||| |||||||||||||||||||||||
Sbjct 1344 AGGCTGCAGATTTTGGATCTTTCGGTGAA-TAATTTCAACAATCAACTCCCTAAGGATGT 1402
Query 999 CGGTTTGATACTTACGAGCTTGAGACATTTGAATCTCTCAAACAATGAGTTTCAAGGGAA 1058
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1403 CGGTTTGATACTTGCGAGCTTGAGACATTTGAATCTCTCAAACAATGAGTTTCTAGGGAA 1462
Query 1059 CATGCCCTCCTCTATGGCCAGGATGGAAAATATTGAATTTATGGACCTATCTTACAACAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 CATGCCCTCCTCTATGGCCAGGATGGAAAATATTGAATTTATGGACCTATCTTACAACAA 1522
Query 1119 CTTCTCAGGGAAATTGCCAAGAAATCTTTTCACAGGTTGTTATTCATTGAGTTGGCTTAA 1178
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1523 CTTCTCAGGGAAATTGCCAAGGAATCTTTTCACAGGTTGCTACTCATTGAGTTGGCTTAA 1582
Query 1179 GCTCTCGCACAACAGATTCAGTGGCCCGATTATTCGGAAATCGAGTGATGAGACCTCTTT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GCTCTCGCACAACAGATTCAGTGGCCCGATTATTCGGAAATCGAGTGATGAGACCTCTTT 1642
Query 1239 GATTACGCTGATCATGGACAATAACATGTTTACAGGGAAGATCCCTCGCACTCTACTCAA 1298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1643 GATTACGCTGATCATGGACAATAACATGTTTACAGGGAAGATCCCTCGTACTCTACTCAA 1702
Query 1299 CTTAAGGATGTTGAGCGTGATCGACTTATCAAACAATTTCCTCACAGGTACAATTCCAAG 1358
||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1703 CTTAAGGATGTTGAGTGTGATCGACTTATCAAACAACTTACTCACTGGTACAATTCCAAG 1762
Query 1359 ATGGTTAGGCAAATTCTTTTTGGAAGTTCTGAGGATCTCAAACAACCGTTTACAAGGTAC 1418
||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 1763 GTGGTTAGGCAATTTCTTTTTGGAAGTTCTGAGGATCTCCAACAACCGTCTACAAGGTGC 1822
Query 1419 AATACCACCTTCTTTGTTCAACATTCCATGCCTCTGGCTCTTGGACCTTTCTGGAAACTA 1478
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1823 CATACCACCGTCTTTGTTCAACATTCCTTACCTCTGGCTCTTGGACCTTTCTGGAAACTT 1882
Query 1479 CTTATCGGGTAGCTTACCCCCGCGGTCCAGCTCGGATTTCGGTTATATATTGGACTTGCA 1538
||| |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1883 CTTGTCGGGTAGCTTACCCCTGCGGTCCAGCTCAGATTACGGTTATATATTGGACTTGCA 1942
Query 1539 CAACAACAATCTCACTGGATCTATTCCAGACACGTTGTGGGACGGGCTCCGGTTGCTTGA 1598
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1943 CAACAACAATCTCACTGGATCTATTCCAGACACGTTGTGGTACGGGCTACGGTTGCTTGA 2002
Query 1599 TCTGAGAAACAACAAACTGTCTGGAAACATACCACTGTTCAGGAGCACCCCGAGCATCAG 1658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2003 TCTGAGAAACAACAAACTGTCTGGAAACATTCCACTGTTCAGGAGCACCCCGAGCATCAG 2062
Query 1659 TGTTGTTCTGTTGAGGG-GTAATAACTTGACAGGAAAGATTCCTGTTGAGCTGTGCGGTT 1717
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 TGTTGTTCTGTTGAGAGAG-AATAACTTGACAGGAAAGATTCCTGTTGAGCTGTGCGGTT 2121
Query 1718 TAAGGAACGTAAGGATGTTGGATTTTGCTCACAA-CAGATTGAATGAGTCCATACCTTCG 1776
|||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 2122 TAAGCAACGTAAGGATGTTGGATTTTGCTCACAATC-GATTGAATGAATCCATACCTTCG 2180
Query 1777 TGTCTCACCAATCTATCATTTGGCTCAGGAGGACATAGTCATGCTGATTCAGATTGGTAT 1836
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2181 TGTGTCACCAATCTATCATTTGGCTCAGGAGGACATAGTAATGCTGATTCAGATTGGTAT 2240
Query 1837 CCGGCGAGCATGCTCTCTAACTTTATGGAGATATACACTGAAGTATATTACAAGTCCCTA 1896
||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |
Sbjct 2241 CCGGCGAGCTTGCTCTCAAACTTTATGGAGATATACACCGAAGTATATTACGAGTCTTTG 2300
Query 1897 ATCGTGTCAGATCGGTTTTCTCTAGACTACTCGGTAGATTTTAATGTCCAAGTTGAATTT 1956
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 ATTGTGTCAGATCGGTTTTCTCTAGACTACTCGGTAGATTTTAATGTCCAAGTTGAATTT 2360
Query 1957 GCGGTGAAACAGAGATATGACTTGTACATGAGAGGAACTCTTAACCAGATGTTTGGCCTG 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 GCGGTGAAACAGAGATATGACTTGTACATGAGAGGAACTCTTAACCAGATGTTTGGCCTG 2420
Query 2017 GATCTGTCAAGCAACGAGTTAAGTGGTAATATCCCAGAAGAGCTAGGAGATCTTAAGAGA 2076
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 GATCTGTCGAGCAACGAGTTAAGTGGTAATATCCCAGAAGAGCTAGGAGATCTTAAGAGA 2480
Query 2077 GTACGCTCACTGAATCTCTCACGCAATTCATTATCGGGTGCTATACCTGGAAGCTTCTCC 2136
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2481 GTACGCTCGCTGAATCTCTCACGCAATTCATTATCGGGTTCTATACCTGGAAGCTTCTCC 2540
Query 2137 AATCTAAGAAGCATAGAAAGTTTGGATCTTTCTTTCAACAAGTTGCATGGAACCATTCCC 2196
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2541 AACCTAAGAAGCATAGAGAGCTTGGATCTTTCTTTCAACAAGTTGCATGGAACCATTCCC 2600
Query 2197 TCACAACTTACAATGTTGCAATCTCTTGTCGTCTTTAACGTGTCTTACAACGATCTCTCA 2256
|||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2601 TCACAACTCACATTGTTGCAATCTCTTGTCGTCTTTAACGTGTCATACAACAATCTCTCA 2660
Query 2257 GGTGTGATTCCGCAAGGAAAACAGTTCAACACCTTTGGTGAGAAGAGTTACTTAGGTAAT 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 GGTGTGATTCCGCAAGGAAAACAGTTCAACACCTTTGGTGAGAAGAGTTACTTAGGTAAT 2720
Query 2317 GTTCTTCTCTGTGGATCACCCACCAACAGAAGCTGTGGTGGTGGTACCACAATCAGCTCA 2376
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2721 TTTCTTCTCTGTGGATCACCCACCAAAAGAAGCTGTGGTGGT---ACCACAATCAGCTCA 2777
Query 2377 GAAAAAGAAGATGAAGATGACGATGAAAGCGGATTAGTCGATATTGTGGTTTTGTGGTGG 2436
| ||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 2778 GGAAAAGAATATGAAGATGACGATGAAAGTGGATTACTCGATATTGTGGTATTGTGGTGG 2837
Query 2437 AGCCTCGGGGCGACCTATGTAACGGTTTTGATGGGGTTTCTGGTGTTCCTCTGCTTTGAT 2496
||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 2838 AGCCTCGGGACGACCTACGTAACGGTTATGATGGGGTTTTTGGTGTTTCTCTGCTTTGAT 2897
Query 2497 TCTCCATGGCGCCGAGCATGGTTCCGCCTTGTTGATACTTTCATCGACCGCGTAAAAGAT 2556
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2898 TCTCCATGGCGCCGAGCATGGTTCTGCCTTGTTGATACTTTTATCGACCGCGTAAAAGAT 2957
Query 2557 GTACTGGGAGTTATCTAGAGATGGTTCACGGACGTAAAGGATGAAACAATAA---GTAAT 2613
||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||
Sbjct 2958 GTACTGGGAGTTATCTAGAGAGGGTTCGTGGACGTGGAGGATGAAACAATAAAATGTAAT 3017
Query 2614 TGTTCAATCTTGCAAATATTTTAATCTTATTGTCAAATTTCTCCATC 2660
||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 3018 AGTTGAATCTTGCAAATATTTTGATCATATTGTCAAATTTCTCCATC 3064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132089560919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5