BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485705
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2422 0.0
> AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37070.1);
Has 11044 Blast hits to 5993 proteins in 551 species: Archae
- 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants
- 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI
BLink). | chr3:19769176-19772369 REVERSE LENGTH=1974
Length=1974
Score = 2422 bits (1311), Expect = 0.0
Identities = 1604/1743 (92%), Gaps = 30/1743 (2%)
Strand=Plus/Plus
Query 21 TTTGAGCAAACTCAGCATTTCGA--TCTCTGTTCAATGGAAGATAACGAGACCAAGAAAA 78
|||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 57 TTTGAGCAAACTCAACATTTCGATCTCTCTGTTCAATGGAAGATAAAGAGAGCAAGAAAA 116
Query 79 GCGAGGTTGAAGTCGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTT 137
|||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 117 GCGAAGTTGAGGTCGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTT 175
Query 138 CTCTTCTCCGAGTTTTCAGAGGCAGATAAGGATGAGAATTGTTTGAAGGATGACAAAGAT 197
||||||||||||||||| ||| ||||||||||||| || ||||||||||| || ||||||
Sbjct 176 CTCTTCTCCGAGTTTTCCGAGACAGATAAGGATGATAAATGTTTGAAGGAGGATAAAGAT 235
Query 198 CTAAATTTCATGAGGGACACACAGTATTGTGATGATGAGATACTGGTTTCTTCAATTGAA 257
||||| ||||||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 236 CTAAACTTCATGAGGGATACACAGTATTGTGATGATGAGATACTTGCTTCTTCTGTTGAA 295
Query 258 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGACCCTGAGAAGGTGATGAAGAAA 317
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 296 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGAGCCTGAGAAAGTTATGAAGAAA 355
Query 318 GGAAAGTATAATTTGCGCAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGAAAGTATAATTTGCGTAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 415
Query 378 GTTTTGGAACCTGAAGAACTGTCAAGCATGATGGAAAACAATCATAAGAGTGGGAAGAAA 437
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 416 GTTTTGGAACCGGAAGAACTGTCCAGCATGATGGAAAGCAATCATAAGAGTGGGAAGAAA 475
Query 438 ACTTTATCGACCATTATAGAGGATATTGATAGATCTACGGAATCCATTTCTACCTTTCAA 497
||||| |||||||| ||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 476 GCTTTACCGACCATTCTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAA 535
Query 498 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCT 557
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 536 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCT 595
Query 558 ATTCAAAGGTCTGCTAAAACATCTGATGCTGCAACACCCGGGAAAAATAATGAATTGAGA 617
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 596 ATTCAAAGGTCTGCTAAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGTGTTGAGA 655
Query 618 GCAACAGAAGTAGCAATGACCCCAACTTCAAGTACAGTGGACATCATTGCCTCTCAAGAA 677
|||||||| |||||||| | |||||||||||||||||||||| ||| |||| |||| | |
Sbjct 656 GCAACAGACGTAGCAATTAGCCCAACTTCAAGTACAGTGGACGTCACTGCCACTCAGGGA 715
Query 678 AAG-GTAAATCTGCTAACAACTGCA--CCCTG---T-GGTATTAGAGCACAAGGACTAGG 730
||| |||| | || | || ||| ||| | | | | ||||| |||||||| |||
Sbjct 716 AAGACTAAA--T-CT-A-AA-GGCAGTCCCAGAAATCCG-AGTAGAGTACAAGGACCAGG 768
Query 731 GAAGGCAACAAAACAGCCTGTTGCCT-CAAGAGGTCTCAGTACATCCATTTCTAAGCCAC 789
||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 769 GAAGGCAACCAAACAGCCTGTTG-CTACAAGAGGTCTCAGTACATCCATTTCCAAGCCAC 827
Query 790 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACGTCAACGAACAGGGCGTCATTAG 849
||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||
Sbjct 828 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACATCGACGAACAGGTCATCATTAG 887
Query 850 ATATAAGCAAAAC-CAAACAAGAAAATAATTCCAAATTCCCTGCGGGTAAAGAGCCAATG 908
||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 888 ATATAAGCAAAACGC-AACAAGAAAAGAATTCCAAATTACCTGCGGGTAAAGAGCCTCTG 946
Query 909 AGTCCCAGAATATCCATTTCGCGACGCACTAAACCTGTCTTGCCAAAACCTGGTTTGCCT 968
|||| ||||||||||| |||||||| ||||||| ||||| |||||||||||| |||||
Sbjct 947 GGTCCAAGAATATCCATGTCGCGACGTGCTAAACCCGTCTTACCAAAACCTGGTGTGCCT 1006
Query 969 TTGAAATCTTCTTTACGTTCTTCAGTTGCCTCAAAAAATGAAATGACCTCTTCATGCTCT 1028
|| || ||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1007 TTTAAGTCTTCTTCACGTTCTTCAGATGCCTCAAAGAATGAAATGACCTCTTCATGTTCT 1066
Query 1029 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCA-AAATCCTTCTATAGATTC 1087
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1067 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCACAAA-CCTTCTATAGATTC 1125
Query 1088 GATAAAGAAGAAGAGTGATTCAAGTTCCAGATTAGCTTCCCAGCCATTGGCAAATCGTTC 1147
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1126 GATAAAGAAGAAGAATGATTCAAGTTCCAGATTATCTTCCCAGCCATTGGCAAATCGATC 1185
Query 1148 TACATCTAGAGGTATTATGGGCCAGGCAAGAATCCCACCCCAACCAACCAATAAGACATC 1207
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1186 TACATCTAGAGGTATTATGGGCCAGCCAAGAATCCCACCCCAACAAACCAATAAGACATC 1245
Query 1208 CAAGTCCAAGCTTTCCTCTAGTGTACCAACTGCTGGTTCTATCAGTGAGTGTTCATCAGA 1267
|||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||
Sbjct 1246 CAAGCCCAAGCTTTCCTCCAGTGTACCAACTGCTGGTTCGATCAGTGACTATTCATCAGA 1305
Query 1268 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAACGGTAACCAGAAAACGGTCTCTCG 1327
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1306 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAATGGTAACCAGAAAACAGTCTCTCG 1365
Query 1328 TGAAAAGGGTCCTGCAAATGCTAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1387
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TGAAAAGGTTCCTGCAAATGATAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1425
Query 1388 AGATGCATCTGTTGTTCAATCTGATGCTAAGGAAAGCACGAAACGAGTTTCAGCTATCAA 1447
|||| |||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1426 AGATACATCTGTTGTCCAAGCTGATGCTAAGGAAGGCACAAAACGAGTTTCAGCTATCAA 1485
Query 1448 CGGTGGTTTGGTTCCTTCAGCTTCCACAAAACCATCAGGTCTCCGCGTGCCATCACCAAA 1507
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1486 CGGTGGTTTGGTTCCTTCAGCTTCCGCAAAACCATCAGGTCTCCGTGTGCCATCACCAAA 1545
Query 1508 AATCGGCTTCTTCGATGGGGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTC--- 1564
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AATCGGCTTCTTTGATGGAGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTCTGG 1605
Query 1565 AGGAAAGTCTCAACCAGCCAGGTCTCCAATACAAGAGTCGTCGAATTCAAAAACTAAGGC 1624
||||||| ||||||| || ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1606 AGGAAAGACTCAACCTGCGAGGTCTCCAATACAAGAGTCGACGAATTCAAAAAGTAAGGC 1665
Query 1625 AAGTTCAAAGCTTGACTCTGTCTCGTCTCCTAAACTGGCAAACAAATTGTATTCCAAAAT 1684
|||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1666 AAGTTCAAAGGTTGTCTCTGTCTCGTCTCCTAAACTGCCGAACAAATTGTATTCCAAAAT 1725
Query 1685 CAATGCAGAAGATCAACTTGAGGGATGATGATGAGAATGAGATGCCTGAAGTTATCAATA 1744
| ||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct 1726 CGATGCAGAAGATCAACTTGAGGGATGATGA-GA-A-TGAGATGCTTGAAGTTATCAATA 1782
Query 1745 GTT 1747
|||
Sbjct 1783 GTT 1785
Score = 99.0 bits (53), Expect = 1e-19
Identities = 60/63 (95%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 1803 TTAATCTAACGAGTTCTAGTATTATGGAATTT-ACGAATTAATCTGGTTTATAAGATACT 1861
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1904 TTAATCTAACGAGTTCTTGTATTATGAAATTTTACGAATTAATCTGGTTTATAAGATACT 1963
Query 1862 CTT 1864
|||
Sbjct 1964 CTT 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5