BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485711
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53380.1 | Symbols: | Concanavalin A-like lectin protein ki... 3411 0.0
> AT3G53380.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:19789062-19791416 REVERSE LENGTH=2355
Length=2355
Score = 3411 bits (1847), Expect = 0.0
Identities = 2127/2261 (94%), Gaps = 24/2261 (1%)
Strand=Plus/Plus
Query 1 AAAACATTTCTTCAACTGATCATTAATG--TCGC--TCT-T-CTTCTTCATTTCAATCTT 54
|||||||||||||||||||||||||||| || | ||| | ||||||||||||||||||
Sbjct 41 AAAACATTTCTTCAACTGATCATTAATGTCTCTCTTTCTCTCCTTCTTCATTTCAATCTT 100
Query 55 GCTCTGTTTCTTCAATGGAGCTACGACGACACAGTTTGATTTCTCCACGTTAGCCATAAG 114
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 101 GCTCTGTTTCTTCAATGGAGCTACGACGACACAGTTTGATTTCTCCACGCTAGCCATAAG 160
Query 115 CAACCTCAAACTCATCGGTGATGCTCGTTTAAGTAATGGAATCGTTGGCCTCACACGTGA 174
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 161 CAACCTCAAACTCCTCGGTGATGCACGTTTAAGCAATGGAATCGTTGGCCTCACACGTGA 220
Query 175 CCTCTCTGTGCCTAATTCCGGTGCCGGGAAAGTTTTATACTCTAACCCAATCAGATTCCG 234
||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 221 CCTCTCTGTACCTAATTCCGGCGCCGGAAAAGTCTTATACTCTAACCCAATCAGATTCCG 280
Query 235 ACAACCTGGAACCCACTTTCCGACAAGCTTCTCTACTTTTTTCTCCTTCTCCATTACCAA 294
|||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 281 ACAACCTGGAACTCACTTTCCGACAAGCTTCTCTTCTTTTTTCTCCTTCTCTATAACCAA 340
Query 295 TGTCAACCCTTCTTCCATCGGCGGTGGTCTCGCTTTCGTCATCTCTCCCGACGCAAACTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGTCAACCCTTCTTCCATCGGCGGTGGTCTCGCTTTCGTCATCTCTCCCGACGCAAACTC 400
Query 355 AATCGGCGTCGCCGGTGGCTCGCTTGGTCTCGCCGGTCCAAACGGGTCCGGTTCAAAATT 414
||||||| |||| |||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 401 AATCGGCATCGCTGGTGGCTCTCTTGGTCTAACCGGTCCAAACGGTTCCGGTTCAAAATT 460
Query 415 CGTCGCCGTCGAGTTTGATACTTTAATGGACGTGGATTTCAAAGACATTAATAGTAACCA 474
||||||||||| || |||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 461 TGTCGCCGTCGAATTCGATACTTTAATGGATGTAGATTTCAAGGACATTAACAGTAACCA 520
Query 475 TGTTGGATTCGACGTAAACGGCGTCCTTTCCTCTGTTTCCGGCGATCTTGGTACCGTAAA 534
|||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 521 TGTTGGATTCGACGTAAATGGCGTAGTTTCCTCTGTTTCCGGTGATCTTGGCACCGTAAA 580
Query 535 CATCGATCTCAAGAGCGGCAACACCATCAATTCATGGATCGAGTACGACGGATTGACTCG 594
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 581 CATCGATCTCAAGAGCGGCAACACCATCAATTCATGGATCGAATACGACGGATTGACTCG 640
Query 595 GGTCTTCAACGTATCAGTCTCTTACTCAAATCTAAAACCTAAAGCTCCGATTTTGTCTTT 654
||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct 641 GGTCTTCAACGTATCAGTCTCTTACTCAAATCTGAAACCGAAAGTTCCAATTTTGTCTTT 700
Query 655 CCCTCTCGATTTAGATCAATACGTGAACGATTTCATGTTCGTCGGATTCTCCGGTTCAAC 714
||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 701 CCCTCTCGATTTAGATCGATACGTGAACGATTTCATGTTCGTTGGATTCTCCGGGTCAAC 760
Query 715 TCAGGGAAGTACAGAGATTCACAGTATCGAATGGTGGAGCTTCAGTTCTTCATTCGGGTC 774
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 761 TCAGGGAAGTACAGAGATTCACAGTATCGAATGGTGGAGCTTCAGTTCATCATTCGGGTC 820
Query 775 GGGTCCT-GGATCCGAATCCGGGTCACCTCCTCCGAGGGCTAATTTGATGAATCCGAAAG 833
| || || ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 821 GAGT-CTCGGATCCGGATCCGGGTCACCTCCTCCTCGGGCTAATTTGATGAATCCGAAAG 879
Query 834 CTAATTCGGTGAAATCTCCGCCGCCGTTAGCGTCACAACCGTCTTCTTCAGCGATTCCGA 893
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 880 CTAATTCGGTGAAATCTCCGCCGCCGTTGGCGTCACAACCGTCGTCTTCAGCGATTCCGA 939
Query 894 TCTCAAGCAACACTCAATCGAAAACTTCGTCGTCG-C--CTTGCCACAGCCGCTTCTGCA 950
|||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||
Sbjct 940 TCTCAAGCAACACTCAATTAAAAACTTCGTCGTCGTCGTCTTGCCACAGCCGTTTCTGCA 999
Query 951 AAGAGAATCCGGGAGCAATCGCCGGAGTAGTAACCGCCGGAGCTTTCTTCTTAGCACTTT 1010
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1000 AAGAGAATCCCGGAACAATCGCCGGAGTAGTAACCGCCGGAGCTTTCTTCTTAGCACTAT 1059
Query 1011 TCGCCGGGGCTTTATTCTGGGTTTACTCCAAAAAGTTCAAACGCGTCGAGAGATCTGATT 1070
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1060 TCGCCGGAGCTTTATTCTGGGTTTACTCCAAAAAGTTCAAACGTGTCGAGAGATCTGATT 1119
Query 1071 CTTTCGCATCTGAAATCATCAAGGCTCCTAAAGAGTTCAGCTACAAAGAACTCAAAGCCG 1130
| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1120 CATTCGCATCTGAAATCATCAAAGCTCCGAAAGAGTTCAGCTATAAAGAACTCAAAGCCG 1179
Query 1131 GCACAAAGAACTTCAACGAGAGTCGAATCATCGGACACGGAGCCTTCGGAGTCGTTTACA 1190
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1180 GCACAAAGAACTTCAACGAGAGTCGTATCATCGGACATGGAGCCTTCGGAGTCGTATACA 1239
Query 1191 GAGGAATATTACCGGAGAGCGGAGACATCGTCGCCGTCAAACGATGCAGTCACAGCTCAC 1250
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1240 GAGGAATATTACCGGAGACCGGAGACATCGTCGCCGTCAAACGATGCAGCCATAGCTCAC 1299
Query 1251 AAGACAAAAAGAAGGAGTTTTTATCGGAATTATCCATAATCGGAAGCTTAAGACACAGAA 1310
||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 1300 AAGACAAAAAGAACGAGTTTTTATCTGAACTATCAATAATCGGAAGCTTAAGACACAGAA 1359
Query 1311 ACCTCGTTCGATTACAAGGATGGTGTCACGAAAAAGGTGAGATTTTGTTAGTCTACGATC 1370
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1360 ACCTCGTGAGATTACAAGGATGGTGTCACGAGAAAGGTGAGATTTTGTTAGTCTACGATC 1419
Query 1371 TAATGCCAAATGGGTCACTCGATAAAGCTTTGTTCGAGTCACGATTCACGTTGCCGTGGG 1430
||||||| ||||| || || |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1420 TAATGCCTAATGGTTCGCTTGATAAAGCTTTGTTTGAGTCACGATTCACGTTACCGTGGG 1479
Query 1431 ATCACCGGAAAAAGATTTTGCTTGGAGTTGCATCTGCTTTAGCTTATTTACATAGAGAGT 1490
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1480 ATCATCGGAAAAAGATCTTGCTTGGTGTTGCATCTGCTTTAGCTTATTTACATAGAGAGT 1539
Query 1491 GTGAGAATCAGGTGATTCACAGAGACGTTAAAAGCAGTAATATAATGTTAGACGAGAATT 1550
||||||||||||||||||| ||||| ||||| || ||||||||||||||||| |||| ||
Sbjct 1540 GTGAGAATCAGGTGATTCATAGAGATGTTAAGAGTAGTAATATAATGTTAGATGAGAGTT 1599
Query 1551 TTAACGCCAAGCTTGGAGATTTCGGATTGGCGAGACAGATTGAGCACGATAAGTCGCCGG 1610
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1600 TTAATGCCAAGCTTGGAGATTTCGGATTGGCGAGACAGATTGAGCATGATAAGTCGCCGG 1659
Query 1611 AAGCGACTGTTGCTGCCGGGACGATGGGGTATTTAGCGCCGGAGTATCTTCTGACTGGCC 1670
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1660 AAGCAACTGTTGCCGCCGGGACGATGGGATATTTAGCGCCGGAGTATCTTCTGACGGGTC 1719
Query 1671 GTGCTTCGGAGAAGACGGATGTGTTTAGTTACGGAGCGGTGGTTTTGGAAGTGGTTAGTG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GTGCTTCGGAGAAGACGGATGTGTTTAGTTACGGAGCGGTGGTTTTGGAAGTGGTTAGTG 1779
Query 1731 GAAGAAGACCGATTGAGAAGGACTTAAATGTGCAGAGACAAAATGTTGGGGCAAATCCGA 1790
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 1780 GAAGAAGACCGATTGAGAAGGACTTAAATGTGCAAAGACATAATGTTGGGGTGAATCCGA 1839
Query 1791 ATTTAGTAGAATGGGTGTGGGGTTTGTATAAAGAAGGGAAAGTTTCTGCAGCGGCTGATT 1850
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1840 ATTTAGTAGAATGGGTGTGGGGTTTGTATAAAGAAGGGAAAGTTTCTGCAGCTGCTGATT 1899
Query 1851 CTAGGCTTGAAGGTAAGTTTGATGAAGGTGAGATGTGGCGGGTCTTGGTTGTGGGCCTGG 1910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1900 CTAGGCTTGAAGGTAAGTTTGATGAAGGTGAGATGTGGCGGGTCTTGGTTGTGGGCTTGG 1959
Query 1911 CTTGTTCGCATCCGGATCCAGC-TGCTAGGCCCACTATGAGGTCAGTGGTGCAAATGCTG 1969
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1960 CTTGTTCGCATCCGGATCCAGCATT-TAGGCCCACTATGAGGTCAGTGGTGCAAATGCTG 2018
Query 1970 ATTGGTGAGGCTGATGTACCGGTTGTGCCCAAGTCTAGACCTACCATGAGTTTTAGCACT 2029
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2019 ATTGGTGAGGCTGATGTACCGGTTGTGCCTAAGTCTAGACCCACCATGAGTTTTAGCACT 2078
Query 2030 TCGCATTTGTTGCTGAGTTTGCAAGATACTCTCTCTGATTGTAGTAATACCGTGGCTTTG 2089
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2079 TCGCATTTGTTGCTGAGTTTGCAAGATACTCTCTCTGATTGTA--A-TACCGTGGCTTTG 2135
Query 2090 AACTCTAGCCGATCGTCGTCGTGGTCTGTGCCGGAACATAACGTTATCATTCGAAGCGAC 2149
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2136 AACTCTAGTCGATCGTCTTCGTGGTCGGTGCCCGAACATAACGTTATCATTCGAAGCGAC 2195
Query 2150 GATGACCATTTGGTATAGATGTTTTGGAGTTTTAAC-AAACAGATGCGTTTTGTGTGTTT 2208
|||||||||||||||||||| | |||||||| ||| ||||||||| |||||||||||||
Sbjct 2196 GATGACCATTTGGTATAGATATATTGGAGTTG-AACCAAACAGATGTGTTTTGTGTGTTT 2254
Query 2209 GATTAGATTTTGATTTGTGTTGTAATATTCAATTCATTTTT 2249
||||| ||| ||||| | | ||||||||||||||||||||
Sbjct 2255 GATTA--TTT-GATTT-T-T-GTAATATTCAATTCATTTTT 2289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114959248050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5