BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485715
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane in... 1777 0.0
AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsi... 946 0.0
AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like sup... 891 0.0
AT3G54820.1 | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsi... 438 5e-122
AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma memb... 357 1e-97
> AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane
intrinsic protein 2A | chr3:19803655-19805713 REVERSE LENGTH=1374
Length=1374
Score = 1777 bits (962), Expect = 0.0
Identities = 1208/1318 (92%), Gaps = 52/1318 (4%)
Strand=Plus/Plus
Query 1 AAAATACAAACTCTCATTCCaaaaaaaaaact---tagcataaaaaa-caaagaaaa-at 55
|||||||||||| |||||||||||||||| || || || |||||| |||| |||| ||
Sbjct 20 AAAATACAAACTTTCATTCCAAAAAAAAACCTCAATA-CACAAAAAACCAAA-AAAACAT 77
Query 56 ataacgttggcaaaaatactaaaaaca---ttt------t-------t-aaaaa-tat-- 95
||||||||||||||||||||||||| | ||| | | ||||| |||
Sbjct 78 ATAACGTTGGCAAAAATACTAAAAATATTTTTTAAAAGATAAAGCAATAAAAAAGTATAC 137
Query 96 -aac-aa-taa-aa-aagtata---cacacaaaaaaacaGAGCACATGTTCTTATCACTA 147
||| || ||| || ||| | | | ||| | |||||||||||||||||||| ||||||
Sbjct 138 AAACAAATTAACAAGAAGGAGAGCTCTCACTATAAAACAGAGCACATGTTCTTCTCACTA 197
Query 148 ACCACT-CAACAGAGAAGCAAAAG-aaaaaaaGCTACTGTTTG--A-AAGAAGAAGCTAA 202
|||||| ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||
Sbjct 198 ACCACTCCAACAGAGAAGCAAAAGAAAAAAAAGCTATTGTTTGAAAGAAGAAGAAGTTAA 257
Query 203 ATATGGCGAAGGATGTGGAAGCCGTTCCCGGAGAAGGATTTCAGACAAGAGACTATCATG 262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 CTATGGCAAAGGATGTGGAAGCCGTTCCCGGAGAAGGATTTCAGACAAGAGACTATCAAG 317
Query 263 ATCCGCCGCCAGCTCCGTTTATTGATGGAGCGGAGCTAAAGAAGTGGTCTTTTTACAGAG 322
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 318 ATCCGCCACCAGCTCCGTTTATTGATGGAGCGGAGCTAAAGAAGTGGTCTTTCTACAGAG 377
Query 323 CAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCGTTTTGACTGTCA 382
|||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 378 CAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATACATCACCGTTTTGACAGTCA 437
Query 383 TCGGTTACAAGATTCAGTCCGATACTAAGGCCGGCGGGGTAGACTGCGGCGGAGTTGGAA 442
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct 438 TCGGTTACAAGATTCAGTCCGATACTGATGCCGGTGGCGTAGATTGCGGCGGAGTTGGAA 497
Query 443 TCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTTCATCCTCGTCTACTGCACCGCCG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTTCATCCTCGTCTACTGCACCGCCG 557
Query 503 GTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGGCTATTCTTGGCACGTAAAG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGGCTATTCTTGGCACGTAAAG 617
Query 563 TGTCGTTGCCTAGGGCCATATTGTACATTGTGGCTCAGTGTTTGGGTGCGATTTGTGGAG 622
||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 618 TGTCGTTACCTAGGGCCCTATTGTACATAATCGCTCAGTGTTTGGGTGCGATTTGTGGAG 677
Query 623 TTGGATTTGTCAAAGCCTTCCAAAGCTCTTACTATGACC-GTTACGGCGGTGGAGCCAAC 681
|||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 678 TTGGTTTTGTCAAAGCCTTCCAAAGCTCTTACTAC-ACCCGTTACGGAGGTGGAGCCAAC 736
Query 682 TCTCTTGCCGATGGCTACAGCACAGGGACCGGTCTAGCGGCAGAGATCATTGGTACTTTC 741
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 737 TCTCTAGCCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGATCATTGGTACTTTC 796
Query 742 GTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCAC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCAC 856
Query 802 GTTCCGGTGTTGGCGCCACTTCCAATCGGATTCGCGGTGTTCATGGTACATTTGGCCACC 861
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 857 GTTCCGGTGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACC 916
Query 862 ATTCCCATCACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTTC 921
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 ATTCCCATTACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTAC 976
Query 922 AACAAGAGCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AACAAGAGCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCT 1036
Query 982 GCGATAGCTGCATTCTACCACCAATTCGTTCTGAGGGCTTCAGGTTCTAAGTCTCTCGGA 1041
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1037 GCGATAGCTGCATTCTACCACCAATTCGTTCTGAGAGCTTCAGGTTCTAAGTCTCTTGGA 1096
Query 1042 TCTTTCAGAAGTGCTGCCAACGTCTAAACCCACCAAAACCAGATTTCTCAATAATAAATG 1101
|| |||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||
Sbjct 1097 TCATTCAGAAGTGCTGCCAACGTCTAAACACATCAAA-CCAGATTTCTCAAGAATAAATG 1155
Query 1102 AAGTTGTAATCTCT--GTACAAATCTAAATCAATCACTTGCAGttttcttttc--tttct 1157
||||||| |||||| |||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1156 AAGTTGTGATCTCTCTGTACAAATCTAAATCAGTCACTTGCAGTTTTCATTTCCCTTTCT 1215
Query 1158 tat-tt-gtgttttctgcttgctcttttgtgaattttcctttcg-tgtaattgtttttcc 1214
||| || |||||||| |||||||||||||||||||||||| || ||||||||||||| |
Sbjct 1216 TATATTTGTGTTTTCCACTTGCTCTTTTGTGAATTTTCCTT-CGGTGTAATTGTTTTTTC 1274
Query 1215 tttcgttttttAATCGAGTGATTGGAACTAAAATCAATGAAATCAAAGAGGTTCTTAT 1272
||||| |||| || ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1275 TTTCGCTTTTAAA-CGAGTGATTGGAATTATAATCAATGAAATCAAAGAGGTTCTTAT 1331
> AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic
protein 2 | chr2:15613402-15614857 REVERSE LENGTH=1146
Length=1146
Score = 946 bits (512), Expect = 0.0
Identities = 729/834 (87%), Gaps = 14/834 (2%)
Strand=Plus/Plus
Query 238 GGATTTCAGACAAGAGACTATC-ATGATCCGCCGCCAGCTCCGTTTATT-GAT--GGAGC 293
|||||||||||||||||||| | | |||||||| ||| |||||||| || ||| ||| |
Sbjct 94 GGATTTCAGACAAGAGACTA-CGAAGATCCGCCACCAACTCCGTTT-TTCGATGCGGA-C 150
Query 294 GGAGCTAAAGAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCT 353
||||| | ||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 151 -GAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATTGCCGAGTTCGTAGCCACTCTCCT 209
Query 354 CTTCTTATACGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGC 413
|||||| ||| |||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 210 CTTCTTGTACATCACCGTTTTAACTGTCATCGGTTACAAGATTCAGTCCGACACAAAAGC 269
Query 414 CGGCGGGGTAGACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTAT 473
||| || || ||||||||||| || |||||||| || ||||| ||||| |||||||| ||
Sbjct 270 CGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCAT 329
Query 474 GATCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGT 533
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 330 GATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGT 389
Query 534 GACATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCTAGGGCCAT-ATTGTACATTG 592
||| ||||| | ||||| || || || || ||| || |||||| | || ||||| |
Sbjct 390 GACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTT-TACATGG 448
Query 593 TGGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTT-GTCAAAGCCTTCCAAAGCTCT 651
||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||
Sbjct 449 TGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGG-TTTCGTCAAAGCCTTTCAAAGCTCT 507
Query 652 TACTATGACCGTTACGGCGGTGGAGCCAACTCTCTTGCCGATGGCTACAGCACAGGGACC 711
|||||||| |||||||| || |||||||||||||| || || ||||||| |||||| |||
Sbjct 508 TACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCAGACGGCTACAACACAGGCACC 567
Query 712 GGTCTAGCGGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACT 771
|| ||||| |||||||||||||| || |||||||| |||||||| |||||||| || |||
Sbjct 568 GGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTCTACACAGTCTTCTCCGCTACT 627
Query 772 GACCCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGA 831
|| |||||||||| || |||||||||||||||||||| |||||||||||||| || ||
Sbjct 628 GATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGG 687
Query 832 TTCGCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCG 891
|| |||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct 688 TTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGCATCAACCCG 747
Query 892 GCAAGGAGTTTCGGAGCTGCCGTAATCT-TCAACAAGAGCAAGCCATGGGATGACCACTG 950
|| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 748 GCTAGGAGTTTCGGAGCTGCCGTAATCTAT-AACAAGAGCAAGCCATGGGATGACCACTG 806
Query 951 GATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGT 1010
|||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 807 GATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCTGCATTTTATCACCAATTTGT 866
Query 1011 TCTGAGGGCTTCAGGTTCTAAGTCTCTCGGATCTTTCAGAAGTGCTGCCAACGT 1064
|| |||||||||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 867 CCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGAAGTGCAGCCAACGT 920
> AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like superfamily
protein | chr2:15617708-15619155 FORWARD LENGTH=1147
Length=1147
Score = 891 bits (482), Expect = 0.0
Identities = 719/836 (86%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 238 GGATTTCAGACAAGAGACTATC-ATGATCCGCCGCCAGCTCCGTTTATT-GATGGAGCGG 295
||||||||||| ||||| || | | ||||| |||||| | |||||| || || | || ||
Sbjct 99 GGATTTCAGACGAGAGATTA-CGAAGATCCTCCGCCAACACCGTTT-TTCGACGCAGAGG 156
Query 296 AGCTAAAGAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCT 355
|||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 157 AGCTTACCAAGTGGTCTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCT 216
Query 356 TCTTATACGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCG 415
|||| |||||||||||||| |||||||| |||||||||||||||||||| || || ||||
Sbjct 217 TCTTGTACGTCACCGTTTTAACTGTCATTGGTTACAAGATTCAGTCCGACACAAAAGCCG 276
Query 416 GCGGGGTAGACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGA 475
| || || ||||||||||| || |||||||| || ||||| ||||| |||||||| ||||
Sbjct 277 GTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCATGA 336
Query 476 TCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGA 535
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 337 TCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGTGA 396
Query 536 CATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCTAGGGCCAT-ATTGTACATTGTG 594
| ||||| | ||||| || || || || ||| || |||||| | || ||||| |||
Sbjct 397 CGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTT-TACATGGTG 455
Query 595 GCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTTGTCAAAGCCTTCCAAAGCTCTTAC 654
||||||||||||||||| |||||||||||||| ||||| || || || ||||||||| ||
Sbjct 456 GCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCATTTCAAAGCTCTCAC 515
Query 655 TATGACCGTTACGGCGGTGGAGCCAACTCTCTTGCCGATGGCTACAGCACAGGGACCGGT 714
|||| |||||| || |||||||||| ||| || || ||||||| ||||| |||||
Sbjct 516 TATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTGACGGCTACAATACAGGCACCGGA 575
Query 715 CTAGCGGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGAC 774
|| |||||||||||||| || || ||||| ||||||||||| |||||||| || |||||
Sbjct 576 CTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCTACACAGTCTTCTCCGCTACTGAT 635
Query 775 CCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTC 834
|||||||| | || |||||||||||||||||||| |||||||||||||| || || ||
Sbjct 636 CCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGGTTT 695
Query 835 GCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCA 894
|||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct 696 GCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGTATCAACCCGGCT 755
Query 895 AGGAGTTTCGGAGCTGCCGTAATCTTCAACAAGAGCAAGCCATGGGATGACCACTGGATA 954
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 756 AGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCAAGCCATGGGATGACCACTGGATA 815
Query 955 TTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCTG 1014
|| ||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 816 TTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTGCATTTTATCACCAATTCGTTCTA 875
Query 1015 AGGGCTTCAGGTTCTAAGTCTCTCGGATCTTTCAGAAGTGCTGCCAACGTCTAAAC 1070
||||| ||||| || ||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 876 AGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAAGTGCAGCCAACGTTTAAAC 931
> AT3G54820.1 | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsic
protein 2;5 | chr3:20302021-20304010 FORWARD LENGTH=1229
Length=1229
Score = 438 bits (237), Expect = 5e-122
Identities = 598/768 (78%), Gaps = 42/768 (5%)
Strand=Plus/Plus
Query 303 GAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATA 362
|||||||||||| |||||||| ||||||| |||||| |||| |||||||| ||| | ||
Sbjct 192 GAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTTTTCCTCTA 251
Query 363 CGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCGGCGGGGT 422
||||| || ||||||||||||||||||||| ||| ||||| | || || | |
Sbjct 252 TGTCACTATTATGACTGTCATCGGTTACAAGAGCCAGACCGAT-C-CAGCCCTGAATCCT 309
Query 423 AGA-CTGCG-GC-GGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTT 479
|| | | | | || ||||| |||| |||||||| |||||||||||||| ||||||||
Sbjct 310 -GACCAGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGCATGATCTT 368
Query 480 CATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACATT 539
|||||||||||||||||||||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 369 CATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCAGTGACTTT 428
Query 540 TGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCT-AGGGCCA-T-ATTGTACATTGTGGC 596
|||||| || ||||| || |||||| ||||| | || || | | || |||||| |||||
Sbjct 429 TGGGCTGTTGTTGGCTCGGAAAGTGACGTTGG-TGAGAGC-AGTGAT-GTACATGGTGGC 485
Query 597 TCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTTG-TCAAAGCCTTCCAAAGCT-CTTAC 654
|||||| | ||||| |||||||| || || |||| |||| |||||||| || |||||
Sbjct 486 TCAGTGCCTCGGTGCCATTTGTGGTGT-GGCTTTGGTCAAGGCCTTCCAGT-CTGCTTAC 543
Query 655 TATGACC-GTTACGGCGGTGGAGCCAAC--TCTCTTGCCGATGGCTACAGCA-CAGGGAC 710
| | ||| | ||||| ||||| || || ||||| | || || ||||||| | || ||
Sbjct 544 T-TCACCCGCTACGGTGGTGGCGCAAATGGTCTCT--CTGACGGTTACAGCATC-GGCAC 599
Query 711 CGGTCTAGCGGCAGAGATCATTGGTACTTTCGTTCTT-GTCTACACCGTCTTCTCTGCCA 769
|||| | || || |||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 600 CGGTGTTGCAGCCGAGATCATTGGTACATTCGT-CTTAGTCTACACCGTCTTCTCTGCCA 658
Query 770 CTGACCCCAA-ACGTAGTGC-CAGAGACTCCCACGTTCCGGTGTTGGCGCCACTT-CCAA 826
|||| ||||| | | ||||| | | ||||| |||||||| || ||||| ||| || ||||
Sbjct 659 CTGATCCCAAGAGG-AGTGCGC-GTGACTCTCACGTTCCTGTATTGGCTCCA-TTGCCAA 715
Query 827 TCGGATTCGCGGTGTTCATGGTACATTTGGCCACCATTCCCA-TCACCGGAACCGGAATT 885
| ||||| || |||||||| || || || || || || |||| |||| || || || ||
Sbjct 716 TTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAAT-CCCAATCACGGGCACTGGTATC 774
Query 886 AACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTTCAACAAG-AGCAA-GCCATGGGATG 943
||||| ||||| ||| |||||||||| | |||| ||||||| | ||| || |||||
Sbjct 775 AACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGA-CAAAGCT-TGGGACC 832
Query 944 ACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACC 1003
| || |||||||| ||||| || || || ||| || || || || || |||||||| |
Sbjct 833 ATCATTGGATATTCTGGGTGGGTCCGTTTGCTGGTGCAGCCATCGCAGCTTTCTACCATC 892
Query 1004 AATTCGT-TCTGAGGGCTTCAG-GTTCTAAGTCTCTCGGATCTTTCAG 1049
| || || | |||||||| | | | |||| | ||||| ||||||||
Sbjct 893 AGTTTGTGT-TGAGGGCTGGTGCGAT-TAAGGCGCTCGGGTCTTTCAG 938
> AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma membrane
intrinsic protein 3 | chr4:16708598-16710248 FORWARD
LENGTH=1207
Length=1207
Score = 357 bits (193), Expect = 1e-97
Identities = 572/744 (77%), Gaps = 70/744 (9%)
Strand=Plus/Plus
Query 307 TGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTC 366
|||||||| |||||||| ||||||| |||||| | ||||| ||||||||| | ||||||
Sbjct 174 TGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTC 233
Query 367 ACCGT-TTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCGG-CGGGGTAG 424
||||| | ||||||||||| |||||| || | | || |||| | || |
Sbjct 234 ACCGTCGCT-ACTGTCATCGGCCACAAGA---AG--C---A--AA--CCGGTCCTTGT-G 279
Query 425 ACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTT-GGTGGTATGATCTTCATC 483
| |||| ||||| | || ||||||||||||| |||| ||||||||||||||| ||
Sbjct 280 A---CGGC---GTTGGTTTACTTGGTATCGCTTGGG-CTTTCGGTGGTATGATCTTCGTC 332
Query 484 CTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGG 543
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 333 CTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGAC-TTTCGG 391
Query 544 -CTATTCTTGGCACGTAAAGTGTCGTTGCCTAG-G-GCCATATTG-T-ACATTG-TGGCT 597
|| |||||||| ||||| || || ||| | | | || | ||| | |||| | | |||
Sbjct 392 TCTGTTCTTGGCCCGTAAGGTCTCTTTGG-T-GCGAGC--TCTTGGTTACAT-GATAGCT 446
Query 598 CAGTGT-TTGGGTGCGATTTGTGGAGTTGGATTT-GTCAAAGCCTTCC--AAAGCTC-TT 652
|||||| |||| || |||||||| || || ||| || ||||| ||| ||| ||| ||
Sbjct 447 CAGTGTCTTGGA-GCCATTTGTGGTGTGGG-TTTCGTGAAAGCTTTCATGAAAACTCCTT 504
Query 653 ACTATGAC-CGTTACGGCGGTGGAGCCAACTCTCTT-GCCGATGGCTACAGCACAGGGAC 710
|| | || | || || || ||||| ||| | | | || || || ||||||| ||| ||
Sbjct 505 ACAAC-ACTC-TT--GGTGGAGGAGCTAACAC-CGTAGCTGACGGTTACAGCAAAGGAAC 559
Query 711 CGGTCTAGCG-GCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCA 769
| ||| | | || ||||| ||||| |||||||| ||||| |||||||| |||||||| |
Sbjct 560 TGCTCTCG-GAGCTGAGATTATTGGAACTTTCGTCCTTGTTTACACCGTTTTCTCTGCAA 618
Query 770 CTGACCCCAA-ACGTAGTGC-CAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAAT 827
||||||| || | | || || | | ||||| ||| | || || ||||| |||||||||||
Sbjct 619 CTGACCCTAAGA-GAAGCGCTC-GTGACTCTCACATCCCCGTTTTGGCTCCACTTCCAAT 676
Query 828 CGGATTCGCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAA 887
||||| || ||||||||||| |||||||| || || ||||| || ||||| || || ||
Sbjct 677 TGGATTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTACTGGAACTGGTATCAA 736
Query 888 CCCGGCAAGGAG-TTTCGGAGCTGCCGTAATCTTCAACAA-GAGCAAGCCATGGGATGAC 945
||| || || || ||| || ||||| || |||| |||||| ||| ||| | |||||||||
Sbjct 737 CCCAGCTAGAAGCTTT-GGTGCTGCTGTTATCTACAACAACGAG-AAGGCGTGGGATGAC 794
Query 946 CACTGGATATTTTGGGTTGGACCATTCATTGG-AGCTGCGATAGCTGCATT--CT-ACCA 1001
|| ||||| ||||||||||| || ||| |||| ||| | |||||||| || ||||
Sbjct 795 CAATGGATCTTTTGGGTTGGTCCGTTC-TTGGGAGCA-C--TAGCTGCAGCAGCTTACCA 850
Query 1002 CCAATTCGT-TCTGAGGGCTTCAG 1024
||||| | | | |||| |||||||
Sbjct 851 CCAATACATAT-TGAGAGCTTCAG 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5