BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485718
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53440.1 | Symbols: | Homeodomain-like superfamily protein ... 2237 0.0
> AT3G53440.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:19810901-19812670 FORWARD LENGTH=1770
Length=1770
Score = 2237 bits (1211), Expect = 0.0
Identities = 1456/1571 (93%), Gaps = 29/1571 (2%)
Strand=Plus/Plus
Query 36 GTTCGTTGAAATGTCGAGAAGAAAATCCACCGTCGTCTTGCCGCAACCCATTCGTCGATC 95
||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 26 GTTCGTTGAAATGACGAGAAGAAAATCCACCGTCGTCCTGCCGCAGCCTATTCGTCGATC 85
Query 96 AGCGAGGCTTATCTCTATGCAGAATCGAGATAGTCAAGTAAAACCCAGGAAAGATCTGGT 155
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 86 AGCGAGGCTTATCTCTCTGCAGAATCGAGATAGTCAAGTGAAACCCAGGAAAGATCTGGG 145
Query 156 CTTTGGCTCGGAA-CCACCGAAGAAAACTCGTCGGGAAGTCCTACGAGGACTATCGAAGA 214
||||||||||||| ||| ||||||||||||||||||||||| || |||| ||||||||||
Sbjct 146 CTTTGGCTCGGAACCCA-CGAAGAAAACTCGTCGGGAAGTCTTAAGAGGTCTATCGAAGA 204
Query 215 GATTAGTATACTCATTGGATAGTCCAATCG-CGA--AGAAATCTCTGGGATTGAACATTT 271
||||||||||||||| |||||||||||||| || || || | |||||||||||
Sbjct 205 GATTAGTATACTCATCGGATAGTCCAATCGAAGATTCGAGGTCGAAGAAATTGAACATTT 264
Query 272 CCAAGGATGGGTTTCC-TACGCTGAGGCGATCTCTTAGGCTTTCGAGTAGGGAATGCT-G 329
| || ||||||||||| | |||| ||| |||||||||||||||||||||||||||| |
Sbjct 265 CGAAAGATGGGTTTCCGT-CGCTAAGGAGATCTCTTAGGCTTTCGAGTAGGGAATG-TCC 322
Query 330 TGGTGTTAATAAAGAGAAGCCTTTTACGAAGAAGACTGCATCTACTTCATCTTCTCGCAC 389
|| || || ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 323 TGAAGTCAACAAAGAGAAGCC---T------AAGACTGCATCTACTTCATCTTCTCGCAC 373
Query 390 GAAATCTTCGGCCACTGTTTCG---TCTTGTTCTCTGAGACGGTCTCCTAGGTTTTCAAG 446
|||||| ||| ||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 374 GAAATCGTCGACCACTGTTTCGTCTTCTTGTGCTCTGAGACGTTCTCCTAGGTTTTCAAG 433
Query 447 TGGAGGAGGAGGATCTGTGGATCAATCTTCTTCTTCCATTGGGTGGAAATCAGGTAATAG 506
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 434 TGGAGGAGGAGAATCTGTGGATCAATCTTCTTCTTCCATTGGGAAGAAATCAGGTAATAG 493
Query 507 TGTTTTGAGTAGATGTAGTACGAAATCAATTTCTTCTGAGAAAGGGAAAGGTGGGGATGG 566
|||||||||||| |||||||||||||||||||| || ||||||| ||||||||| |||||
Sbjct 494 TGTTTTGAGTAGCTGTAGTACGAAATCAATTTCATCGGAGAAAGTGAAAGGTGGAGATGG 553
Query 567 TGTGAAAAGTAAGGATAGAAGTAGAAGTCGTCTTCGTCCTAAGTCTAAGCAGTTGTTTAG 626
| ||||| |||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 554 TTTGAAATCTAAGGATAGAAGTAGAAGTCGTGTTCGTCCTAAGACTAAGAAGATGTTTAG 613
Query 627 TGGTTGTGATGATAATGAAGAAGAAG--G-AGAAGTTAGTGTCTGTCTTAGTGAGAGGAA 683
|||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||
Sbjct 614 TGGTTGTGATGATAATGAAGAAGAAGAAGAAGAAGTTAGTGTCTGCCTTACTGAGAGGAA 673
Query 684 AAGGATGAGAATTGCAAAACCGAATGAGgaagaaaatgttg-tgccaaaagctgatgaag 742
|||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||
Sbjct 674 AAGGATGAGAATTGCAAAGCCGAATGAGGAAGAAAATGCTGAAG-CAAAAGCTGATGAAG 732
Query 743 tgaagagaaaaggaaaggatgaagaagaagatgatgaagaagaagaagatggattgaaga 802
||||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||
Sbjct 733 TGAAGAGAAAAGGAAAGGAGGAAGAAGAAGA--A-GAAGATGAAGAAGAAGGATTGAAGG 789
Query 803 caaagaagaagcttgagaaagGAGGATGGACAGAGGAGTTGGAGTTAGCTTTACAAGGAG 862
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CAAAGAATAAGCTTGAGAAAGGAGGATGGACAGAGGAGTTGGAGTTAGCTTTACAAGGAG 849
Query 863 CTTATTTGACGGTGAAGCCGAGTCCTAATTTCTGGAAAAAAGTTGCTAAGATGGTACCTG 922
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 850 CTTATTTGACGGTGAAGCCAAGTCCTAATTTCTGGAAAAAAGTTGCTAAGATGGTTCCTG 909
Query 923 GAAAATCTGCGCAGGAATGTTTTGATAGAGTGAACTCAGCTCTGATCACTCCTCGTCAAG 982
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 910 GAAAATCTGCGCAGGAATGTTTTGATAGAGTGAACTCAGCTCTGATTACTCCTCGTCAAG 969
Query 983 CTCAGCCTCGAAGAGCAAGGAACACAAACTTATCAACAATCCCGCAGTTTTCGCTCTCTG 1042
|||||||||||||||| | || |||| ||||||||| || ||||||||||| || ||||
Sbjct 970 CTCAGCCTCGAAGAGCCACAAAAACAATCTTATCAACGATTCCGCAGTTTTCACTTTCTG 1029
Query 1043 CAAGCAAACTACTGAAACCCAATTCACCAAAGACAAAGATACGACAGCGCAGAAACAATC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CAAGCAAACTACTGAAACCCAATTCACCAAAGACAAAGATACGACAGCGCAGAAACAATC 1089
Query 1103 TCTCAAAGAAAGTGGTCAGGCATTTACTGGAGAAGCAAAATCATATGGATCAAGGTCTTG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TCTCAAAGAAAGTGGTCAGGCATTTACTGGAGAAGCAAAATCATATGGATCAAGGTCTTG 1149
Query 1163 GATTTGATCTATTCTCCGTTCTTGAGCCTAACACCACAAGCAATTTTCTCTCTACTCCAA 1222
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1150 GATTTGATCTCTTCTCAGTTCTTGAGCCTAACACCACAAGCAATTTTCTCTCAACTCCAA 1209
Query 1223 TGGAGAAAGGGCAAAGTCTTCCAAAAATCCTTGAAAGTCCAGTGCCTTGTTCAAGTAAAG 1282
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 TGGAAAAAGGGCGAAGTCTTCCAAAAATCCTTGAAAGTCCGGTGCCTTGTTCAAGTAAAG 1269
Query 1283 ATCCAACAACTCTCGTTAGCCCTCCAGTACTAAAACAGGTAAAAAACAAGGCATTGCATG 1342
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1270 ATCCAACAACTCTCGTTAGCCCTCCAGTACTGAAACAGGTAAAAAACAAGGCATTGCATG 1329
Query 1343 AGAAGTACATTGATCATCTGCATATCAGGGAAGCTAAAAGAAAAGCCGAGTCAACTCGAC 1402
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1330 AGAAGTACATTGATCATCTGCATATCAGGGATGCTAAAAGAAAAGCCGAGTCAACTCGAC 1389
Query 1403 TGGCTGGGAAAGAGAACATAAGACCTATTGAAATTCAGAAGAAGGATTCAGTGAGAGCAG 1462
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1390 TGGCTGGGAAAGAGAACATAAGACCTATTGAAATTCAGAAGAAGGATTCGGTGAGAGCAG 1449
Query 1463 CAAAGGATGCCCTTTTCTTTGATGTACAAGATGCAATCCAAAAGCTAAAGGGTCTGGAAG 1522
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1450 CTAAGGATGCACTTTTCTTTGATGTACAAGATGCAATCCAAAAGCTAAAAGGTCTGGAAG 1509
Query 1523 CTGAGAACTCATCTAGTTCTTCAGAGTTTTGCTATGATCATGGCGAAAATGACGAAGAAG 1582
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1510 CTGAGAACTCATCTAGTTCTTCAGAGTTTTGCTATGATCATGTCGAAACGGACGAAGAAG 1569
Query 1583 ATGAAATCTAG 1593
|| ||||||||
Sbjct 1570 ATTAAATCTAG 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5