BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485726
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1218 0.0
> AT3G53490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G02720.1); Has
70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19832472-19834073
FORWARD LENGTH=921
Length=921
Score = 1218 bits (659), Expect = 0.0
Identities = 782/841 (93%), Gaps = 9/841 (1%)
Strand=Plus/Plus
Query 27 TACGCATTTCTCCAACGCCATAGCCAATAGCTCGATGAGATCCAACAGTGCCTCCTGTTC 86
|||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| ||
Sbjct 44 TACGCATTTCTCCAACTCCATAGCCAAAAGCTCGACGAGATCCAACAGCACCTCCTGATC 103
Query 87 TGCATCGTTTTCGACTAAAGCTTCTCCTGTCAATCGAAAACCCTAATTATACATTGATCG 146
|||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 104 TGCATCGTTTTCAACT-TAGCTTCTCCTGTCAATCGAAATCCCTAATTATACATTGATCG 162
Query 147 GATTCGATCGAGCGATTGGATACG-GAATCGCGATGTCAATCCGAATTCCATCAGCTTCT 205
||||| ||||||||||| || | | |||||||||||||||||| |||||| |||||||||
Sbjct 163 GATTCAATCGAGCGATTCGAGA-GAGAATCGCGATGTCAATCCAAATTCCGTCAGCTTCT 221
Query 206 TGGGATGTTCGCGGTTTCCTACTCTTTTTCATCTTCTTCAGCTCGTTCCCAGGAACAATA 265
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 222 TGGGATTTTCGCGGTTTCCTACTCTGTTTCATCTTCTTCAGCTCGTTACCAGGAACAATA 281
Query 266 CTAACACAAGAAGTTACACTT-GATTCGATTCGGATTTTCACCACTCACGACTGGTTCTC 324
|||||||||||||||||| || |||||| ||| ||||||||| |||||||| ||||||||
Sbjct 282 CTAACACAAGAAGTTACA-TTAGATTCGGTTCAGATTTTCACGACTCACGATTGGTTCTC 340
Query 325 CACTAAGCCTACAGTCTATTTCCAATGCAAAGGAGAGAACAAGACGGTGTTACCTGATGT 384
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 341 GACTAAGCCTACAGTCTTTTTCCAATGCAAAGGAGAGAACAAGACGGTGTTGCCTGATGT 400
Query 385 GAAGAGAACCAATGTTTCTTA-TGCTTTCAATGGCGAAGAATCTTGGCAGCCATTAACCG 443
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 401 GAAGAGAACCAATGTTTCTTACT-CTTTCAATGGCGAAGAATCTTGGCAGCCACTAACCG 459
Query 444 AACTGAAAGGAACAAAATGCAAGAGATGTGGAATCTATGAAGACGACCCCCTTAAATATG 503
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 460 AACTTCAAGGAACAAAATGCAAGAGATGTGGAATCTATGAGGACGACCCTCTTAAATATG 519
Query 504 ATACATTTGACGAATGGGAGCTTTGTCCTTCTGATTTCACAGCAGAAGGTAGTTACAAGC 563
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 520 ATACATTTGACGAATGGGAGCTTTGCCCTTCTGATTTCACAGCAGAGGGTAGTTACAAGC 579
Query 564 GC-GAAAAGGAGAAAGAATTTAATGCTACTTTTCTTTGCCATGGATGCTCACAAGTCGGA 622
|| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 580 GCTTCAAA-GAGAAAGAATTTAATGCTACTTTTCTCTGCCATGGATGCTCACAAGTTGGA 638
Query 623 GCTGGTTCAAACAAACAATCAGGCACTGAGAATGAAGAAGAAAAGAGCGGAATGCATCCT 682
|||||||| || ||| |||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 639 GCTGGTTCGAATAAAGAATCAGGCACCGAGAAGGAAGAACAAAAGGGCGGAATGCATCCT 698
Query 683 GCAATTGTGGTACTGATTGTAGTACTCATGTTAGGTGTAGTTGCGGTGGGACTTTTGGTA 742
| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 699 GGAATTGTGGTACTGATTGTAGTACTCTTGTTAGGTGTAGTTGCGGTGGGACTCTTGGTA 758
Query 743 GGTTACAAGTATTGGAGGAAGAAGAAACGGCAACAAGAGCAGGCCCGGTTTCTCAAGCTG 802
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GGTTACAAGTATTGGAGAAAGAAGAAACGGCAACAAGAGCAGGCCCGGTTTCTCAAGCTG 818
Query 803 TTTGAAGATGGTGATGAAATTGAGGACGAACTTGGCCTTGAAAATACCCTATGAAGCTAA 862
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 819 TTCGAAGATGGTGACGATATTGAGGACGAACTTGGCCTTGAAAATACCCTATGAAGCCAA 878
Query 863 G 863
|
Sbjct 879 G 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5