BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485730
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53520.4 | Symbols: UXS1 | UDP-glucuronic acid decarboxylase... 2037 0.0
> AT3G53520.4 | Symbols: UXS1 | UDP-glucuronic acid decarboxylase
1 | chr3:19841374-19844303 FORWARD LENGTH=1884
Length=1884
Score = 2037 bits (1103), Expect = 0.0
Identities = 1207/1255 (96%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 1 GAAGGATTGCATCAAGTAATCGCCGTGTAACTAACTACTTTTGTTGCA-TCACCATCGCT 59
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 111 GAAGGATTGCATCAAGTAATCGCCGTGTAACTAACTAC--TT-TTGCATTCACCATCGCT 167
Query 60 CTTTCGTTTGAATCTATCCAGATCCAAAG--C-TCTTCTTCCCGGCAATTCTGAGATCTC 116
||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 168 CTTACGTTTGAATCTATCCAGATCCAAAGCTCTTCTTCTTCCCGGCAATTCTGAGATCTC 227
Query 117 ATTTTCACCGGCGACGAGCTTTAATCGGAGAACGATGAAGCAGCTTCACAAGCAAATGAG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATTTTCACCGGCGACGAGCTTTAATCGGAGAACGATGAAGCAGCTTCACAAGCAAATGAG 287
Query 177 CTCGAAGCGTGACGAAGAAACGATTCCCATGAGCCAATCCAGTCCTTACTCTCCCAAAAC 236
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 288 CTCGAAGCGTGATGAAGAAACCATTCCCATGAGCCAATCCAGTCCTTACTCTCCCAAAAC 347
Query 237 TCTAAAGCATCCCAGATCTCTTCCTAGATCGCTTCACTATCTCTTCCGTGAACAACGACT 296
| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 348 TTTAAAGCATCCCAGATCTCTTCCCAGATCGCTTCACTATCTCTTTCGTGAACAACGACT 407
Query 297 CCTCTTTATCCTCGTCGGGATCTTGATCGGATCCACTTTCTTCATCCTTCAGCCTTCTCT 356
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 408 CCTCTTTATCCTCGTCGGGATCTTGATCGGATCCACTTTCTTCATCCTCCAGCCTTCTCT 467
Query 357 CTCTCGTTTAGGCGCCGCTGAGTCCACCTCGTTAATCACCAGATCTGTTTCCTACGCCGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CTCTCGTTTAGGCGCCGCTGAGTCCACCTCGTTAATCACCAGATCTGTTTCCTACGCCGT 527
Query 417 CAGCGATTCCCCGCCTTCCATGAAGACTTTTAATTCCGG---CGGCGGAGGTAGAACCGG 473
|| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 528 CACCGATTCCCCGCCTTCCAGGTCGACTTTTAATTCCGGAGGCGGCGGAGGTAGAACCGG 587
Query 474 TCGTGTTCCCGTCGGTATCGGACGGAAGAGACTGAGGATTGTTGTCACCGGTGGAGCTGG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TCGTGTTCCCGTCGGTATCGGACGGAAGAGACTGAGGATTGTTGTCACCGGTGGAGCTGG 647
Query 534 TTTCGTCGGTAGCCATCTTGTTGATAAGCTTATCGGTAGGGGAGATGAAGTGATCGTGAT 593
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TTTCGTCGGTAGTCATCTTGTTGATAAGCTTATCGGTAGGGGAGATGAAGTGATCGTGAT 707
Query 594 TGATAACTTCTTCACTGGTAGGAAGGAGAATTTGGTTCATCTGTTCTCGAATCCTAGGTT 653
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 708 TGATAACTTCTTCACTGGTAGGAAGGAGAATTTGGTTCATCTATTCTCGAATCCTAGGTT 767
Query 654 TGAGCTTATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCACATTTACCA 713
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 768 TGAGCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCA 827
Query 714 TTTAGCTTGCCCAGCTTCACCTGTTCATTACAAGTATAATCCAGTGAAGACTATCAAGAC 773
||||||||| ||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 828 TTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCATTT-----TA-CAAGAC 881
Query 774 TAATGTAATGGGCACTCTCAATATGTTGGGTCTTGCAAAGAGAGTTGGGGCTAGGTTTCT 833
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 882 AAATGTAATGGGCACTCTCAATATGTTGGGTCTTGCAAAGAGAGTTGGGGCAAGGTTTCT 941
Query 834 GCTCACCAGCACAAGTGAAGTCTATGGAGATCCCCTTGAGCATCCACAGAAAGAGACTTA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCTCACCAGCACAAGTGAAGTCTATGGAGATCCCCTTGAGCATCCACAGAAAGAGACTTA 1001
Query 894 TTGGGGAAACGTGAACCCAATCGGTGAGAGGAGTTGCTATGATGAAGGAAAGCGTACTGC 953
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CTGGGGAAACGTGAATCCAATCGGTGAGAGGAGTTGCTATGATGAAGGAAAGCGTACTGC 1061
Query 954 AGAAACCCTGGCCATGGATTATCACAGAGGTGCAGGTGTGGAGGTCAGAATAGCTCGTAT 1013
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1062 AGAAACCCTGGCCATGGATTATCACCGAGGTGCAGGTGTGGAGGTTAGAATTGCTCGTAT 1121
Query 1014 TTTCAACACATATGGACCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGT 1073
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGT 1181
Query 1074 TGCCCAGACCATCCGCAAACACCCAATGACTGTTTATGGTGATGGTAAACAAACTCGTAG 1133
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1182 TGCCCAGACCATTCGCAAACACCCAATGACTGTTTATGGTGATGGAAAACAGACTCGTAG 1241
Query 1134 CTTTCAATATGTATCTGACTTGGTGGAGGGACTTGTAGCGTTAATGGAAAACGATCACGT 1193
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1242 CTTTCAATATGTTTCTGACTTGGTGGAGGGACTTGTAGCTTTAATGGAAAACGATCATGT 1301
Query 1194 AGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAG 1248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAG 1356
Score = 632 bits (342), Expect = 3e-180
Identities = 413/446 (93%), Gaps = 9/446 (2%)
Strand=Plus/Plus
Query 1247 AGGTTGTTAAGGAGGTGATCGATCCAAGCGCGACCATAGAGTTCAAACCAAACACAGCGG 1306
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1430 AGGTGGTTAAGGAGGTGATCGACCCAAGCGCGACCATAGAGTTCAAACCAAACACAGCAG 1489
Query 1307 ACGATCCTCACAAGAGGAAACCAGACATAAGCAAAGCAAAGGAACTGTTGAACTGGGAAC 1366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1490 ACGATCCTCACAAGAGGAAACCAGACATAAGCAAAGCAAAGGAACAGTTGAACTGGGAAC 1549
Query 1367 CAAAGATCTCACTTCGAGAAGGTCTGCCTCGCATGGTTAGTGACTTCCGTAACCGAATCT 1426
||||||| || || | || || |||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAAGATATCTCTGAGGGAGGGACTGCCTCGCATGGTTAGTGACTTCCGTAACCGAATCT 1609
Query 1427 TAAACGAAGACGAAGGGAAAGGTCTCTAAGTCAGTCACACAGAGATA--GAGTATTATCC 1484
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1610 TAAACGAAGACGAAGGTAAAGGTCTCTAAGTCAGTCACACAGAGATATAGAGTATAATCC 1669
Query 1485 TTCTTCTGCTTTGATTTGATATATGTATAGTCTCTTTTTCAAGAGATCTGCTAAGTCTTT 1544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1670 TTCTTCTGCTTTGATTTGATATATGTATAGTCTCTTTTTCAAGAGCTCTGCTAAGTCTTT 1729
Query 1545 TTGTTCTCTGttttttttttttttGGTTCTTTCTCCAAGACACAGATTTACTACTTAT-T 1603
||||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1730 TTGTTCTCTCTGTTTTTTCTTTTTGGTTCTATCTCCAAGACACAGATT-ACTACTTATAT 1788
Query 1604 -AGCTAATGTTTTCGACTCAAAAGGGATTTTGTCACTGGGCCATTTACCAGTAGGCTCAA 1662
|||||||||||| |||| |||||||||||| ||||||||| |||| |||||||||
Sbjct 1789 TAGCTAATGTTTTTGACTT----GGGATTTTGTCATTGGGCCATTCACCACTAGGCTCAA 1844
Query 1663 TTTTAGTGGAAAGGTATTGATATAAA 1688
| ||||||||||||||||||||||||
Sbjct 1845 TATTAGTGGAAAGGTATTGATATAAA 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5