BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485733
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chap... 1441 0.0
AT3G53540.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 139 5e-32
> AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chaperone
protein | chr3:19845097-19846820 FORWARD LENGTH=1086
Length=1086
Score = 1441 bits (780), Expect = 0.0
Identities = 902/960 (94%), Gaps = 12/960 (1%)
Strand=Plus/Plus
Query 1 TTTTGTTTGTATATATTAATAAGCTTTTGTTTTTGCCATAAA-ACATGAAAGCCAATATG 59
||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||| ||||
Sbjct 59 TTTTGTTTGTATATATTAATAAGCTCTTG-TTTTGCCAAAAATACATGAAAGCCGGTATG 117
Query 60 TTTTATTGTGCATCGCAAGCATCGACCGCTACGGCTAACGGCGAACGTACCGTCACGGCT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 TTTTATTGTGCATCGCAAGCATCGACCGCTACGGCTAACGGCGAACGTACCGTCACCGCT 177
Query 120 CGAGCCATCGACCGTCATAACCCGATTATCAAAGATGGTAGAAGATCTTTCACTGCACCG 179
||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 178 CGAGCCATCGACCGTCATAACCCGATTATCAAAGATGGTCGTAGATCTTTCACGGCACCG 237
Query 180 TGTTCCTCCGGGGATGACTACGTTGCTCCCTACCGTCAGCTTTCCAAAATTACGAGAATA 239
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 238 TGTTCCTCCGGAGACGACTACGTTGCTCCCTACCGTCAGCTTTCGAAAATTACGAGAGTA 297
Query 240 CCCTCCTCCTCCGGAGACGGGAAGAGTGCTCAGGTGGATAAAGGAAGGAGGAGCAATTCA 299
|||||||||||||| || || ||||||| |||||| ||||||||| |||| |||||||||
Sbjct 298 CCCTCCTCCTCCGGCGATGGAAAGAGTGTTCAGGTAGATAAAGGACGGAGAAGCAATTCA 357
Query 300 GGGTCGTTGATGAAGCTGATTAGC-ACTGACGTCAGCTTAGCTAGGAAGAGTTTTGGTTG 358
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||
Sbjct 358 GGGTCGTTGATGAAGCTGATTAGCTA-TGACGTCAGCTTAGCGAGGAAGAGTTTTGGCTG 416
Query 359 TGTCGTTGCAACGCCCAAAACTCCTCCCGGTTCAACTAGGTATCTTCTGGGATCCGACCC 418
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TGTTGTTGCAACACCCAAAACTCCTCCTGGTTCAACTAGGTATCTTCTGGGATCCGACCC 476
Query 419 TGTTTCTTTAGCCGGGTCTACGGGTCAGGATACGGTTGCAACGGTA-GAGGGTGAAGCTT 477
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 477 TGTTTCTTTAGCCGGGTCTACGGGTCAGGATACGGTTGCAACGG-AGGAAAGTGAAGCTT 535
Query 478 CTGGGCCAAAAATAAGCTCTTCTGGTGCCGTAGAAGAGAAGAAGAAGTCTTCTGGTTCAG 537
||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 536 CTGCGCCAAAAAGAGGCTCTTCTGGTCCCGTAGAAGAGAAGAAGAAGTCTTCTGGTTCAG 595
Query 538 GTTCAGACCAGGTGGTTGTTCTTAGAGTGTCTCTTCACTGTCACTGCAGAGGCTGTCAAG 597
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 GTTCAGACCAGGTAGTTGTTCTTAGAGTGTCTCTCCACTGTCACTGCAGAGGCTGTCAAG 655
Query 598 GCAAAGTGAAGAAACATCTATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAAAGTGAAGAAACATCTATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATT 715
Query 658 TTGCATCAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTGCATCAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCC 775
Query 718 TCTCAAAGGTCAAAAATGCCCAATTCTGGACGCCACCTCCATCATCAATCCCAAGGGCAA 777
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 776 TCTCAAAGGTCAAAAATGCCCAATTCTGGACACCACCTCCACCATCAATCCCAAGGGCAA 835
Query 778 ATCCGGAAACCTAAAAGAATCACACACTTTTGTGTATATGTATTGTCTTCCT--CTC--A 833
||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||| |
Sbjct 836 ATCCGGAAACCTAAAAGAACCACTCACTTTTGTGTATTTGTGTTGTCTTCCTAGCTCTTA 895
Query 834 TTTGTTTGAATCAGATCAATGGTAAAATGTTGAGACTTTCCTACTTTTATGATGAAACTA 893
|||| ||||||||||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct 896 TTTGCTTGAATCAGATCAATCGTAAAATGT-G-GACTTTCCTACTTTTATGATTAAACTG 953
Query 894 TCATTACAGGGACACATGCTTCTTTATGATGAAGTTCTCATTACATATTGCATTATCCTG 953
|||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||
Sbjct 954 TCATTACAGGGACACATGCTTCTTTATGATAAAATTGTCATTACATACTGCATTATCCTG 1013
Score = 73.1 bits (39), Expect = 5e-12
Identities = 48/52 (92%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 950 CCTGAAACTATGTTACAGAA-AGATTATTTAACTTTCTAGAAGATTGCACCT 1000
||| ||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1036 CCTTAAACTATGTAACA-AAGAGATTATTTAACTTTCTAGAAGATTGCACCT 1086
> AT3G53540.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis
thaliana protein match is: Protein of unknown function
(DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins
in 206 species: Archae - 2; Bacteria - 409; Metazoa -
304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes
- 485 (source: NCBI BLink). | chr3:19846647-19850968 REVERSE
LENGTH=3231
Length=3231
Score = 139 bits (75), Expect = 5e-32
Identities = 94/103 (91%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 851 AATGGTAAAATGTTGAGACTTTCCTACTTTTATGATGAAACTATCATTACAGGGACACAT 910
||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 3231 AATCGTAAAATG-TG-GACTTTCCTACTTTTATGATTAAACTGTCATTACAGGGACACAT 3174
Query 911 GCTTCTTTATGATGAAGTTCTCATTACATATTGCATTATCCTG 953
||||||||||||| || || |||||||||| ||||||||||||
Sbjct 3173 GCTTCTTTATGATAAAATTGTCATTACATACTGCATTATCCTG 3131
Score = 73.1 bits (39), Expect = 5e-12
Identities = 48/52 (92%), Gaps = 2/52 (4%)
Strand=Plus/Minus
Query 950 CCTGAAACTATGTTACAGAA-AGATTATTTAACTTTCTAGAAGATTGCACCT 1000
||| ||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 3108 CCTTAAACTATGTAACA-AAGAGATTATTTAACTTTCTAGAAGATTGCACCT 3058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5