BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485736
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53550.1 | Symbols: | FBD-like domain family protein | chr3... 1079 0.0
> AT3G53550.1 | Symbols: | FBD-like domain family protein | chr3:19856870-19858308
FORWARD LENGTH=771
Length=771
Score = 1079 bits (584), Expect = 0.0
Identities = 709/769 (92%), Gaps = 9/769 (1%)
Strand=Plus/Plus
Query 1 GTGCGAGAGCTATGTTTCATGCTCACCTGGTCCGCG-GAGCCAACCAGCTTGCCAAAGAG 59
|||||||||||||||||||||||||| ||| | | | ||||| |||||||| || |||||
Sbjct 7 GTGCGAGAGCTATGTTTCATGCTCACGTGGGCTG-GAGAGCCGACCAGCTTACCTAAGAG 65
Query 60 CCTTTACACATGTGAAACTCTTGTCTCTCTATGTCTTTCCGACAAAATTCTCATTGATGT 119
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 66 TCTTTACACATGTGAAACTCTAGTCTCTCTATGTCTTTCCGGCAAGATTCTCATTGATGT 125
Query 120 TCCTTCTTTGGCTTGCCTTCCATCCCTCAAAGAAAACGAAGGTATTGTGGGGACTTTGGT 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCCTTCTTTGGCTTGTCTTCCATCCCTCAAAGAAAACGAAGGTATTGTGGGGACTTTGGT 185
Query 180 TATAGATTCACCGGTTTTAAAGAAAATCTTTATTACAGATTATTCAGGAGACTTTTGCTC 239
||||||||||||| ||||||||||||||| |||||||||||||| ||||||| || |||
Sbjct 186 TATAGATTCACCGATTTTAAAGAAAATCTGCATTACAGATTATTCGGGAGACTCTTACTC 245
Query 240 GTTTGAGAATAAGCCTCGCCTTGATAAGGCAAAGATCAACCTTTTAC-ATTACCCTGATA 298
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 246 GTTTGGGAATAAGCCTCGCCTTGATAAGGCAAAGATCAACCTTTT-CTATTACCCTGATA 304
Query 299 ACAAATTTATGAGATCTCTTTCCTCAATCATGTGTCTCGAATTAATTTTGAGCGTTGCAA 358
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 305 ACAAGTTTATGAGATCTCTTTCCTCAATCATGTGTCTCGAACTAATTTTGAGCGTTGCAA 364
Query 359 CGCTTGCGTGGCTGAACGCTATTACCTTCTCTCGGCTTATAGAGTGTAAACTGATTATTC 418
||||||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 365 CGCTTGCGTGGTTGAACGCTAATAACTTCTCTCGGCTTATAGAGTGTAAGCTGATTATTC 424
Query 419 TAAACGAGTTAGAGTACTGGTTGGAACCACTAATGTCATTCAAACGACTCGAAAAGGAGT 478
||||||||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||
Sbjct 425 TAAACGAGTTAGA---CTGGTTGGAATCACTAATGTCGTTCAAACAACTTGAAAAGGAGT 481
Query 479 TGCCAATTTCATGGAACCAACCGAGTTCTGTTCCCGAATGCATGTCAAACCATCT-AGAG 537
||||| |||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 482 TGCCACTTTCATGGAACCAACCGAGTTCTGTTCCCGAATGTTTGTCCAACCATCTCA-AG 540
Query 538 ATCTTTGAGTGGAAAGGATATAGAGGAAGAAGGGAGGAGAAAGAAATCATGCGATACATC 597
|| || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||
Sbjct 541 ATATTCGAGTGGAAAGGATATAGGGGAAGAAAGGAGGAGAAAGAAATCGTGCGATACATC 600
Query 598 CTTGCCAACTCTAAGTGTTTAAAGAGAGTTGGAGTCTTCTTGAGATCAACCAACAAGGAT 657
|||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||| ||
Sbjct 601 CTTGCCAACTCTAAGTGTTTAAGGAGAATTGGAGTCTCCTTGAAATCAACCAACAACCAT 660
Query 658 AAGACGATGAAAGAGTTAGAATCTATGTCTAGGGTTTCGACATCATCCCATCTTATATTC 717
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AAGACGATCAAAGAGTTAGAATCTATGTCTAGGGTTTCGACATCATCCCATCTTCTATTC 720
Query 718 TCCACTCAAGTGGAATATATGAGCGTCAACAATGAAGTAATGAGTGACT 766
||||||||| | |||||||||||||| |||||||| ||| ||||||||
Sbjct 721 TCCACTCAATTTGAATATATGAGCGTTGACAATGAAATAAGGAGTGACT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5