BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485744

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53600.1 | Symbols:  | C2H2-type zinc finger family protein ...   881    0.0  


> AT3G53600.1 | Symbols:  | C2H2-type zinc finger family protein 
| chr3:19875532-19876059 FORWARD LENGTH=528
Length=528

 Score =  881 bits (477),  Expect = 0.0
 Identities = 511/528 (97%), Gaps = 0/528 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAAGAGAGCGGTCCGATTACGAAGAATCCATGAAGCATATAGACATAGTAGAAAGT  60
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGAGAGACCGGTCCGATTACGAAGAATCCATGAAGCATATAGACATAGTAGAAAGT  60

Query  61   CTAATGATGTTATCTCGAAGTTTCGTGGTCAAACAAATCGATGTAAAGCAATCTACCGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTAATGATGTTATCTCGAAGTTTCGTGGTCAAACAAATCGATGTAAAGCAATCTACCGGA  120

Query  121  AGCAAAACCAATCATAATAACCACTTCGAATGCAAAACGTGTAACCGGAAATTTGATTCC  180
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGCAAAACGAACCATAATAACCACTTCGAATGCAAAACGTGTAACCGGAAATTTGATTCC  180

Query  181  TTCCAAGCTCTTGGAGGTCATAGAGCTAGCCACAAGAAACCTAAGCTGATCGTTGACCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTCCAAGCTCTTGGAGGTCATAGAGCTAGCCACAAGAAACCTAAGCTGATCGTTGACCAA  240

Query  241  GAACAGGTGAAGCATCGTAACAATGAGAATGATATGCATAAGTGTACAATTTGCGATCAA  300
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GAACAGGTGAAGCATCGTAACAAAGAGAATGATATGCATAAGTGTACAATTTGCGATCAA  300

Query  301  ATGTTTGGGACCGGTCAAGCACTAGGCGGTCACATGAGAAAGCATAGGACGAGCATGATA  360
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATGTTTGGGACCGGTCAAGCTCTAGGCGGTCACATGAGAAAGCATAGGACGAGCATGATA  360

Query  361  ACCGAGCAATCGGTTATCCCTTCTGTTGTTTATTCCAGACCGGTTTTGAATCAATGCAAT  420
            |||||||||||| || |||||||||| |||||||||||||||||||| ||||  |||| |
Sbjct  361  ACCGAGCAATCGATTGTCCCTTCTGTGGTTTATTCCAGACCGGTTTTTAATCGTTGCAGT  420

Query  421  AGCAACAAGAAGATCTTGGACTTAAATCTAACTCCATTAGAGAATGATCTTGTGTTAATC  480
            |||| |||| |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  421  AGCAGCAAGGAGATCTTGGACTTAAATCTAACTCCATTGGAAAATGATCTTGTGTTAATC  480

Query  481  TTTGGGAAGAATTTGGTTCCACAAATTGATTTGAAGTTTGTGAATTAG  528
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TTTGGGAAGAATTTGGTTCCACAAATTGATTTGAAGTTTGTGAATTAG  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5