BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485747
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GT... 1818 0.0
> AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB
GTPase homolog 8 | chr3:19876232-19878519 REVERSE LENGTH=1082
Length=1082
Score = 1818 bits (984), Expect = 0.0
Identities = 1043/1071 (97%), Gaps = 6/1071 (1%)
Strand=Plus/Plus
Query 1 AAACaaaaaaaaaTCTTCTGAATCTCCGAAAAAAGCCGATCGGGAGAAGAAAATAATTCA 60
||| ||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct 11 AAAAAAAAAAAAAACTTCTGAATCTCCGAAAAAAGCCAATCGGGGGAAGAAAAAAATTCA 70
Query 61 ACGGCCGTCCGGTTACTGTCTTGC-TCCGTTCCGACGATCTATCTTCCCCGAGTAGATCT 119
||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||| |
Sbjct 71 ACGGCCGTCTGGTTACTGTCTTGCTTGC-TTCCGACGATCTATCTTCCCCGAGTAGATTT 129
Query 120 GAAATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCT- 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GAAATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTG 189
Query 179 CTTGATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTC 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 C-TGATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTC 248
Query 239 GTTTACCACCAGTTTCATTACAACGATTGGAATTGATTTCAAGATAAGGACTATAGAGCT 298
|||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| |||||
Sbjct 249 GTTTACCACCAGTTTCATTACAACTATTGGGATTGATTTTAAGATACGGACTATTGAGCT 308
Query 299 CGATGGGAAGAGAATTAAGCTGCAAATCTGGGATACTGCAGGACAGGAGCGGTTCCGCAC 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 309 CGATGGGAAGAGAATTAAGCTGCAAATCTGGGATACTGCCGGACAGGAGCGGTTCCGCAC 368
Query 359 AATCACAACTGCGTACTACCGTGGAGCCATGGGAATTTTGCTTGTGTATGATGTGACCGA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 369 AATCACAACTGCGTACTACCGTGGAGCCATGGGGATTTTGCTTGTGTATGATGTGACTGA 428
Query 419 TGAATCATCTTTCAACAACATCAGGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGAATCATCTTTCAACAACATCAGGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGA 488
Query 479 TAGTGTCAACAAGATTCTAGTTGGGAACAAAGCAGATATGGATGAAAGCAAAAGAGCTGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TAGTGTCAACAAGATTCTAGTTGGGAACAAAGCAGATATGGATGAAAGCAAAAGAGCTGT 548
Query 539 GCCAAAATCTAAGGGCCAAGCTCTTGCAGATGAATATGGAATGAAGTTTTTCGAGACTAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GCCAAAATCTAAGGGCCAAGCTCTTGCAGATGAATATGGAATGAAGTTTTTCGAGACTAG 608
Query 599 TGCCAAGACTAACTTAAACGTTGAGGAAGTTTTCTTCTCTATTGCTAAAGACATTAAGCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGCCAAGACTAACTTAAACGTTGAGGAAGTTTTCTTCTCTATTGCTAAAGACATTAAGCA 668
Query 659 AAGACTTGCAGATACCGATGCACGAGCTGAGCCGCAAACAATCAAAATCAACCAATCCGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AAGACTTGCAGATACCGATGCACGAGCTGAGCCGCAAACAATCAAAATCAACCAATCCGA 728
Query 719 TCAAGGTGCGGGAACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGCACATAAAAATT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CCAAGGTGCGGGAACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGCACATAAAAATT 788
Query 779 GGGTCCACGACGCCTGTCAAAGGAGAGAATCTGGCTAGTGAAAGAGAAATGGTATTTGga 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GGGTCCACGACGCCTGTCAAAGGAGAGAATCTGGCTAGTGAAAGAGAAATGGTATTTGGA 848
Query 839 aagaaaaaatgaaaaaggaaaTCAATCTTCTTTTGCTTTTCTTCTATATGAGATG-TGTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 849 AAGAAAAAATGAAAAAGGAAATCAATCTTCTTTTGCTTTTCTTCTATATGAGATGGTGTT 908
Query 898 GCTACGTGTTCTTTTAAGATTCTCTCTTTCCCCTAATGGTATAGTGTGACTGTGAAGGAC 957
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 909 TCTACGTATTCTTTTAAGATTCTCTCTTTCCC-TAATGGTATAGTGTGACTGTGAAGGAC 967
Query 958 ACAATTCGTATTCCATATTTCTGGAATGTATTCTCTGACATCAGAATATGACTTATGATA 1017
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 968 ACAATTCGTATTCCATATTTCTGGAATGGATTCTCTGACATCAGATTATGACTTATGATA 1027
Query 1018 ATATCAGTTTATCTCACTCACACACCAATGATATTGGATTCTTTGTATACA 1068
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1028 ATATCAGTTTATCTCACTCACACACCAATGATATTGGATTCTATGTATACA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5