BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485748
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53620.1 | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr... 1489 0.0
> AT3G53620.1 | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19880504-19883672
FORWARD LENGTH=1296
Length=1296
Score = 1489 bits (806), Expect = 0.0
Identities = 990/1070 (93%), Gaps = 48/1070 (4%)
Strand=Plus/Plus
Query 1 TTCCAAAATTAAAGAGATTTTAATTTATTGTTTTCC-TCCA-AAATATTAATTAATATTC 58
||||||||||||||||| |||||||||||||||||| |||| ||| | | ||||||||||
Sbjct 4 TTCCAAAATTAAAGAGAATTTAATTTATTGTTTTCCTTCCAGAAA-AAT-ATTAATATTC 61
Query 59 TTTCTAAAAT-ATAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACAGAGAGCGGGAAC 117
|||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 TTTCTAAACTAAAAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACATAGAGCGGGAAC 121
Query 118 GCGTATAGTTACAGctttcttctcctttagctttcctctct--ac-t-att-gct-tctc 171
|||| |||| |||||||||||||||||||||||| |||||| || | || || ||||
Sbjct 122 GCGTTTAGTCACAGCTTTCTTCTCCTTTAGCTTTTCTCTCTACACTTGCTTCTCTCTCTC 181
Query 172 tct-c---------tccttcttGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAT 221
||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCTCCTTTGGGTTATCCTTCTTGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAC 241
Query 222 TTTAGCTCGGGAGATTTCAGATTTGTCGATTTGCTCAGCAATGGCGCCACCGATTGAGGT 281
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 242 TTTATCTCGGGAGATTTCAGATTTGTCGATTTGTTCAGCAATGGCGCCACCGATTGAGGT 301
Query 282 TTCCACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 341
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTCTACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 361
Query 342 TTCGTCCATGAGCCACAGATCAGTTGCTGCACACCCATGGCATGATCTCGAGATAGGACC 401
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TTCGTCCATGAGTCACAGATCAGTAGCTGCACACCCATGGCATGATCTCGAGATAGGACC 421
Query 402 TGAGGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAGTA 461
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TGAAGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAATA 481
Query 462 TGAACTTGACAAAACTACCGGTCTCATTAAGGTCGATCGTATTCTTTACTCATCTGTCGT 521
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 TGAACTCGACAAAACTACGGGTCTCATTAAGGTCGACCGTATTCTTTACTCATCTGTCGT 541
Query 522 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 601
Query 582 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 661
Query 642 TGGTCTGATGCCAATGATTGACCAGGGTGAGAAAGACGACAAGATTATTGCTGTCTGCGC 701
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 662 TGGTCTGATGCCAATGATTGATCAGGGTGAGAAAGACGACAAGATCATTGCTGTCTGCGC 721
Query 702 TGATGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 761
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGACGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 781
Query 762 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 841
Query 822 CGACTTCCTTCCTGCAACTGCAGCGTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 881
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 842 CGACTTCCTTCCGGCAACTGCAGCCTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 901
Query 882 AGACTACGTCGTGGAGAACCTAAGACGTTGAA--A--A------GC--T----------C 919
|||||||||||||||||||||||||||||||| | | || | |
Sbjct 902 AGACTACGTCGTGGAGAACCTAAGACGTTGAATCACCACCTCAAGCAATGGAATGAAAGC 961
Query 920 --ACAACTGCATTTTTCATAAATATAAGTATACATATAAATGTCAGGCTTCCCAAAGGAT 977
||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 962 TCACAACTGCATTATTCACAAATATAAATATACATATAAATGTCAGGCTTCTCAAAGGAT 1021
Query 978 ATCTTTGT-GT--ATGTCCTCTGATGAATCCGTTAGATGATGCCGATAAT 1024
|| ||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 1022 ATATTTGTTGTGTATGTCCTCTGATGAATCCGGTAGATGATGCCGATAAT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5